Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F08
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    27   0.12 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   0.86 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.1  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
 Frame = +2

Query: 239 SNQGYHRQRFIPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTH-FWSKFLNNFNF- 412
           S + Y R R    E  S++++   R Y+  S  + R R   E    H   S   NN+N+ 
Sbjct: 35  SRKRYSRSR--EREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYN 92

Query: 413 ------IHLDNYRPAMYR*NVI 460
                 ++ +NYR   Y  N I
Sbjct: 93  NNNYKKLYCNNYRKLYYNINYI 114


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 281 SRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNNFNFIHLDNYRPAMY 445
           SR   ++ R R  +  SSL  +        N + ++   NN+N  + +NY+   Y
Sbjct: 300 SRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
 Frame = +2

Query: 239 SNQGYHRQRFIPNESRSHRDKWRCRGYQCDSSLKKRKRGGTE----------LPNTHFWS 388
           S + Y R R    E +S++++   R Y+  S  + R R   E          L N + +S
Sbjct: 268 SRKRYSRSR--EREQKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNNYKYS 325

Query: 389 KF--LNNFNFIHLDNYRPAMYR*NVIV 463
            +   NN+N  + +NY   +Y  N I+
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYII 352


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 96  YVLNIEAKDFVDGTKVN 146
           Y LN E+KDF+D  + N
Sbjct: 126 YFLNSESKDFIDFIQKN 142


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 VTVTSGGVGATNVTLHLKSERGEGL 362
           V++    +  TN  +++  E+GEGL
Sbjct: 192 VSLAVQAIDRTNTMVYIADEKGEGL 216


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 313 PTPPLVTVTSAFV 275
           P PP+ TVTSA V
Sbjct: 181 PEPPVPTVTSACV 193


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +2

Query: 251 YHRQRFIPNE-SRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNNFNFI 415
           Y + R    E SR  R++ R +  +  SSL           N + + K   N N+I
Sbjct: 278 YRKYRETSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINYI 333


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 14/65 (21%), Positives = 26/65 (40%)
 Frame = +2

Query: 251 YHRQRFIPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNNFNFIHLDNY 430
           Y  +R       + +++ R R  +  S   K       L N + ++   NN+N  +  NY
Sbjct: 50  YKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNY 109

Query: 431 RPAMY 445
           +   Y
Sbjct: 110 KKLQY 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,518
Number of Sequences: 438
Number of extensions: 2690
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)