Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F04
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    33   0.002
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    33   0.002
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   3.1  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   4.0  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   4.0  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   9.3  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 170 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 298
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK ++G++
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 170 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 298
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK ++G++
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 354 PSYVRSLLRAFLPRSVLCGIMPLTVFH 274
           PS+  S +R+FL  +    ++P  ++H
Sbjct: 34  PSFKLSKIRSFLNITASAVLLPFAIYH 60


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 608 MVLSPXTPSHQHPW*SS*VSFHR 540
           M + P +PS    W    VSFH+
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHK 76


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 608 MVLSPXTPSHQHPW*SS*VSFHR 540
           M + P +PS    W    VSFH+
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHK 76


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 79  QMTTAIDHYGLIAK 38
           Q+ +A+D YGL+A+
Sbjct: 137 QLFSAVDPYGLVAQ 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,699
Number of Sequences: 336
Number of extensions: 3490
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)