Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F04
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   234   5e-62
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   234   5e-62
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    31   0.58 
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   2.3  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  234 bits (572), Expect = 5e-62
 Identities = 108/202 (53%), Positives = 141/202 (69%)
 Frame = +2

Query: 35  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 214
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 215 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 394
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 395 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVXRVAYEKKLKRITKD 574
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 575 AGEKVSKATTPFTTIIQSYGYN 640
           A +  +     +  II++ GYN
Sbjct: 181 AKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  234 bits (572), Expect = 5e-62
 Identities = 108/202 (53%), Positives = 141/202 (69%)
 Frame = +2

Query: 35  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 214
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 215 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 394
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 395 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVXRVAYEKKLKRITKD 574
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 575 AGEKVSKATTPFTTIIQSYGYN 640
           A +  +     +  II++ GYN
Sbjct: 181 AKKNAAPKIAQYQKIIEALGYN 202


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 434 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAV-XRVAYEKKLKRITKDAGEKV 589
           +YC  G+ S  H I WKYRD V  ++ K K  A+  R A E K   I  D  +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 524 PCPSSCLQAYEQHHGISIQFHGTVCLHD 441
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 521 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 432
           C S  L  +E HHGI +   G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 499 LTNNITVFPSNFMGQSAYMTVITARFQTE 413
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,275
Number of Sequences: 27780
Number of extensions: 328332
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)