Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F03
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    32   0.12 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    31   0.27 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.63 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.9  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   3.4  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   3.4  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   7.8  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   7.8  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 32/122 (26%), Positives = 51/122 (41%)
 Frame = +2

Query: 269 SEHSGEESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLD 448
           S+HS  E   +   +   L S++K  +  R    ++     R   T   ++S S + NLD
Sbjct: 306 SKHSSIEPNTSQEDSFQELPSLNKLSIQSRAFKKMRLPKISRTTDTPPASTSNSNKKNLD 365

Query: 449 KWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEA 628
           K      LC             +++RK   ++L +++ L K  SL    N K  K LD  
Sbjct: 366 KLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKTLDKVDSL----NRKMAKELDRK 421

Query: 629 NS 634
           NS
Sbjct: 422 NS 423


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 527  KALAEALNENEILHKSLSLLTEENLK-YKKLLDEANSFIEVCKELMSDTADDT 682
            K L EAL         LS + E N K YK LLD+ N      K L S+T   T
Sbjct: 1038 KTLREALQSKTNNIDHLSTILERNRKEYKSLLDDYNQLRARYKNLQSNTPQST 1090


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 443  LDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 619
            L KW +   L    PS+  ++    K  +A+  +  E EIL K  +L+ E+NL  +KLL
Sbjct: 2140 LSKWSTPTKLV--EPSQ--FRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIARKLL 2194


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 751 LFYWFNSIFNSAIAYFSIIYFNASIISSV 665
           +FYWF  I +S++A  +++YF  S++ SV
Sbjct: 574 VFYWFFKISSSSLA-TAVLYFGYSLLISV 601


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 287  ESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISEN 466
            E+  + NTA+  + S+D  ++       I +YFSP   +T  K S   + V L+++  E 
Sbjct: 940  ENTSSPNTASNPVWSIDNSVITELLPKQIWDYFSPNFYLTFWKLSLYDVFVPLERYEFER 999

Query: 467  DLCLEVPSET 496
                +   +T
Sbjct: 1000 SRAFDQIRQT 1009


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 449 KWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 619
           KW  +    L V    Y +  A +       A+N   IL KS + + E NLK + +L
Sbjct: 653 KWKKDGQPWLVVAEHNYGEGSAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVL 709


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 485 PSETYWKVVAEKRRKALAEAL-NENEILHKSLSLLTEENLKYKKLLDEAN 631
           PS+   + + EK ++  AE L +ENE L  S  L +   LK +KL+D  N
Sbjct: 351 PSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDN 400


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 434 QVNLDKWISENDLC-LEVPSETYWKVVAEK 520
           ++N D W  ENDL   ++P E Y K+ + +
Sbjct: 76  KINFDAWSFENDLSDNDMPKENYLKIFSNQ 105


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 548 NENEILHKSLSLLTEENLKYKKLL 619
           NENEIL   +S L EE +  K LL
Sbjct: 509 NENEILSAQVSALREEIVSLKTLL 532


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 401 VTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLS 580
           +TK KN         D+ I   DL   +PS+   K+  E++  AL +  + + I H S S
Sbjct: 153 MTKMKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEERQPIALEKTKSLDSISHSSSS 212


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 500  WKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADD 679
            W  V++        +LN+N  ++K   L T+E L  K L+   + F+ + +E     +D 
Sbjct: 848  WDEVSDYTLLYQPYSLNKNPPINKIQPLTTDEMLYPKMLVGIDSEFVALQQEETEVRSDG 907

Query: 680  TGIEIDDTKI 709
            T   I  +K+
Sbjct: 908  TKSTIKPSKL 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,560
Number of Sequences: 5004
Number of extensions: 49413
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)