Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F03
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 38 0.013
04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173... 32 0.50
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 31 0.88
05_01_0146 - 953957-956278,956468-956786,957185-957213 30 2.0
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 29 4.7
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 6.2
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 29 6.2
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/107 (26%), Positives = 54/107 (50%)
Frame = +2
Query: 362 KGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAE 541
KG ++E + ++ +KK+ + ++ LD+ +E + + V EK ++A E
Sbjct: 740 KGLVQEREGLKQVLDEKKSDIEKLKHALDEKNAELENLKQTLDGN--NSVLEKLKQAWDE 797
Query: 542 ALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDT 682
+E+E + ++L + E K K LDE NS IE K +++ +T
Sbjct: 798 LNSESENIKQALDVKNSEVDKLKHALDENNSEIENLKHTLNEKNSET 844
>04_04_1037 +
30316557-30316692,30317104-30317180,30317287-30317353,
30317761-30317813,30317906-30318322
Length = 249
Score = 32.3 bits (70), Expect = 0.50
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 497 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTAD 676
Y K + EK +K ++ N + L + S +T+ NL +D A E ELM +D
Sbjct: 126 YLKEILEKAQKNISLDANGSANLSSTRSQITDINLALSGFMDNATQVQEENNELMKPISD 185
Query: 677 D 679
D
Sbjct: 186 D 186
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 491 ETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDE 625
E Y +VV +++R+A A L E E + ++ L E+ LK+++ D+
Sbjct: 215 EAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADD 259
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 515 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEI 694
E +A +EALN + + + LTEEN+K L+E E K + D E
Sbjct: 453 EAAEEAASEALNNEKAANVKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAALSEES 512
Query: 695 DDTK 706
D K
Sbjct: 513 DKAK 516
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 29.1 bits (62), Expect = 4.7
Identities = 29/101 (28%), Positives = 45/101 (44%)
Frame = +2
Query: 287 ESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISEN 466
E+ SNT ILK RKKGS KE SP N + + + +
Sbjct: 636 EADSGSNTKFLILKKF------ARKKGS-KESDSPHNSLDATSTVQPIRRKKAAGRLKGS 688
Query: 467 DLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLT 589
+ ++ ET+ + ++ KAL + LN NE+ ++ L LT
Sbjct: 689 SVERQLEGETH---IQQQLNKALEDNLNANEVTNQELLPLT 726
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/103 (25%), Positives = 51/103 (49%)
Frame = +2
Query: 362 KGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAE 541
KG ++E F + KK+ N+D ++EN+L ++ S + E+R K L+E
Sbjct: 1208 KGFLRETFEESERLLKKER-------NIDTGVNENELHQQLLS------ITEERDKLLSE 1254
Query: 542 ALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDT 670
N ++++S E ++ K +DE +S I + + M ++
Sbjct: 1255 IKYMNSVINES------ELIQAKATIDELSSRISIVEAKMKNS 1291
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 28.7 bits (61), Expect = 6.2
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = +2
Query: 326 KSVDKDL---LAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSET 496
K V DL L+ KKG I E R+ + + K I++ L++ ++++ EV E
Sbjct: 583 KQVAADLVRKLSSDKKGLIDE---KRSFIEENKKLHAHIKI-LEQSVADHQ---EVSRER 635
Query: 497 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANS-FIEVCKELMSDTA 673
+ A+K ++ LA + EN+ L + E+N K L++ S +E CK ++ D
Sbjct: 636 --AISADKLKEQLAASEKENKQLELARLNQEEKNSSLLKELEDCRSKLLESCK-MVQDAV 692
Query: 674 DDTGIEI 694
G +
Sbjct: 693 QKLGANV 699
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,892
Number of Sequences: 37544
Number of extensions: 237167
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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