Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F02
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   3.7  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   4.9  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   6.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   6.5  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   8.6  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 257 PLNQLGFHPSICSRQPPPRLFLP*SSNAFRFEGRG 153
           PLNQ G +P++  R PP  + +     +F +   G
Sbjct: 585 PLNQKGMNPNLTVRDPPAGVLIFRLQESFTYPNAG 619


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = -2

Query: 218 RQPPPRLFLP*SSNAFRFEGRGSRCNYN*NLRTYISRWVAHLLCRRLWVLITTSNQVGCE 39
           R P P  F+      F FEG    C     L   ++   AH + R     I  +  V C 
Sbjct: 159 RDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVARHSAEKIAFTRAVSCI 218

Query: 38  V 36
           V
Sbjct: 219 V 219


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 437 SPVKLQKCRLNQISFHPSLCSRRISNWRSPPR 532
           SP+K  +   N  +F P+   RR + W  P R
Sbjct: 156 SPIKETRLPTNLPAFSPTSVERRFTEWNVPLR 187


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 460 SPKSNFLSPIAMFTTYLKLEVPPPSSSSNV 549
           +PKS F S     +T  K EV PPS S  +
Sbjct: 441 APKSQFSSSPTKESTTRKSEVEPPSPSKEI 470


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 158 RGSRCNYN*NLRTYISRWVAHLL 90
           +GS  NYN N   Y   WV H++
Sbjct: 28  QGSATNYNSNWVNYKGAWVIHIV 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,357
Number of Sequences: 5004
Number of extensions: 64398
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)