Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F02
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               28   9.1  

>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +1

Query: 463 PKSNFLSPIAMFTTYLKLEVPPPSSSSNVLHQEPRYFGTSSGNMSAMNIDHKLYK*FL*Y 642
           P    L+P+ + T  L++ + P  SS  +    P Y  +S    S++     LYK    Y
Sbjct: 225 PPLQVLAPLQVLTP-LQVSLFPLQSSP-LYKSSPPYKSSSLYKSSSLYKSSSLYKSSSLY 282

Query: 643 RSP*KYKSVCMYPHFAL 693
            SP  YKS  +Y   +L
Sbjct: 283 ESPPLYKSSSLYKSSSL 299


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -2

Query: 713 GINKLALRAKCGY---IQTDLYFYGERY 639
           G+NKL    K GY   I T  Y YG RY
Sbjct: 687 GVNKLTANMKLGYTGYIPTMRYLYGSRY 714


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,222,926
Number of Sequences: 59808
Number of extensions: 465717
Number of successful extensions: 2336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)