Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F02
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 229 RYAQDNHHPAYFCREAV--MHFGLKGEAAVVTIIETLELISQGGW 101
           R+A+DNHHP+      V  +   ++ E AV+  I+ L    Q GW
Sbjct: 247 RFAKDNHHPSQHLSSTVEMLSTQMRVEVAVIDEIQMLR-DEQRGW 290


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 229 RYAQDNHHPAYFCREAV--MHFGLKGEAAVVTIIETLELISQGGW 101
           R+A+DNHHP+      V  +   ++ E AV+  I+ L    Q GW
Sbjct: 249 RFAKDNHHPSQHLSSTVEMLSTQMRVEVAVIDEIQMLR-DEQRGW 292


>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +2

Query: 641 IVLHKNTNPFVCTRILLLMLTC*FLIPM 724
           I+++   +P +C++I+++ L   FLIP+
Sbjct: 133 ILIYPKDHPMICSKIMIISLPLLFLIPL 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,538,244
Number of Sequences: 27780
Number of extensions: 367576
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)