Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F01
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0485 + 21330547-21330684,21331391-21331471,21331610-213316... 36 0.035
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553... 31 0.75
04_04_1053 - 30431236-30431428,30431794-30431856,30433497-304336... 31 1.3
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 4.0
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 29 5.3
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 28 7.0
>06_03_0485 +
21330547-21330684,21331391-21331471,21331610-21331683,
21331767-21331842,21332014-21332081,21332803-21332926,
21333264-21333362,21333679-21333815,21334166-21334247,
21334595-21334657,21335272-21335319,21335452-21335514,
21335840-21335923,21336098-21336118
Length = 385
Score = 35.9 bits (79), Expect = 0.035
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = +2
Query: 386 GLVNWGFLMLTVGGVRLCLENFLKYGFRVNPIEWIIVLTGYNEGHSHQYPSVVLLIFSIV 565
GL+N ++L RL +EN +KYG + W ++ +P ++ +
Sbjct: 50 GLLNLCIVVLVAVNSRLIIENLMKYGLLIRAGFW------FSGTSLADWPLLMCCLTLPT 103
Query: 566 PTVVALMIEKGIAVNLINEKLGVFLQITNILFIITLPAVVL 688
+ ALM+EK LI++ + + L I ++ P VV+
Sbjct: 104 FPLAALMVEKLAQRKLISKHVVILLHIVITTSVLVYPVVVI 144
>12_02_0900 -
24153734-24153943,24154461-24155110,24155198-24155334,
24156595-24157223
Length = 541
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 536 SVVLLIFSIVPTV-VALMIEKGIAVNLINEKLGVFLQITNILFIITLPAVVLQIK 697
S++ F+IVPT+ VAL +K +++++NE L V LQ I F + +P + L K
Sbjct: 406 SLITRSFAIVPTIIVALFFDKSDSLDVLNEWLNV-LQSIQIPFAL-IPLITLVSK 458
>04_04_1053 -
30431236-30431428,30431794-30431856,30433497-30433615,
30433696-30433797,30434588-30434677,30434851-30435141,
30435218-30435373,30435466-30435699
Length = 415
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 302 VRSSQLDKPIHKPRDSLFSWSSEFANFTGLVNWGFLMLTVGGVRLCLENFLKYG-FRVNP 478
V ++ KP+ K W S A F G N FL+L + + L N L +
Sbjct: 67 VAATATSKPVLKDPKKYQEWDSLTAKFAGAANVPFLLLQLPQIILNARNLLAGNKTALFA 126
Query: 479 IEWIIVLTG 505
+ W+ +LTG
Sbjct: 127 VPWLGMLTG 135
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -2
Query: 438 QSRTPPTVSIRKPQFTNPVKFANSELHENKESRGL*IGLSNCELRT 301
QSR + I P+ T P KF ++HE K L + L N LRT
Sbjct: 726 QSRFSLNLDIAAPKITVPTKFRPDDIHETK----LLLDLGNLILRT 767
>06_01_0844 -
6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 591 SIISATTVGTILNISKTTDGYW 526
S++ G + N+SK TDG+W
Sbjct: 198 SLVDGLLTGALKNLSKNTDGFW 219
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +2
Query: 359 WSSEFANFTGLVNWGFLMLTVGGVRLCLENFLKYGFRVNPIEWIIV-LTGYNEGHSHQYP 535
W S N+ NW L + +R ++ F+ GFR + + ++ G N+G + Y
Sbjct: 309 WDSRLFNYA---NWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYK 365
Query: 536 SVVLLIFSIVPTVVALMIEKGIAVNLINE 622
L + V +V +M+ + L+ E
Sbjct: 366 EYFSL-DTDVDAIVYMMLANHLMHKLLPE 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,902
Number of Sequences: 37544
Number of extensions: 330126
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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