Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F01
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)       31   1.0  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)          28   7.1  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       28   7.1  
SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)           28   7.1  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   7.1  
SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  

>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
          Length = 573

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 380 FTGLVNWGFL--MLTVGGVRLCLENFLKYGFRVNPIEW 487
           F+G  +W FL  +L   GV++ +  F    FRV P++W
Sbjct: 351 FSGPFDWVFLIVLLLCIGVQIIIVQFFTNSFRVEPLDW 388


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/57 (26%), Positives = 34/57 (59%)
 Frame = +2

Query: 524 HQYPSVVLLIFSIVPTVVALMIEKGIAVNLINEKLGVFLQITNILFIITLPAVVLQI 694
           H Y  + ++I +++  ++ L++   + VN+I   + V + IT  + IIT+ +V++ I
Sbjct: 36  HHYHHISVIIIAVI--IITLLVVVVVVVNIIIIIIIVVIIITTSVIIITIISVIITI 90


>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
          Length = 336

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 518 HSHQYPSVVLLIFSIVPTVVALMIEKGIAVNLINEKLGVFLQITNILFII 667
           H H Y     ++FS+VPT+V ++I     +   N   G+ + +T  L++I
Sbjct: 48  HLHSY-----ILFSVVPTIVDIVIAIVYFIAAFNGWFGLIVFLTMALYLI 92


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 538  SCFTYIQYCTNCCCTYD*KRNCCEFNK*KTWRVLTNN*YIVYYHAARCCS 687
            +C T+ +Y  N CCT++   N C  NK + W    NN Y  Y   + CCS
Sbjct: 2109 NCCTH-EYGWNNCCTHEYGWNNCCNNKYR-W----NNCYTHYNGWSNCCS 2152


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 474 FTRKPYFKKFSRQSRTPPTVSIRKPQFTNPVKFANSELHENKE 346
           F RK Y+    ++SR PP     +  + NP      EL  N+E
Sbjct: 185 FRRKYYYYDLEKKSRKPPEKDPERFTYENPEYCDIPELENNRE 227


>SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)
          Length = 546

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 663 INNILVICKNTPSFSFIKFTAIPFSIISATTVGTILNISKTT 538
           +NNI  +  N+ +    K TA P +IIS  T   + NIS+ T
Sbjct: 335 VNNISEVTANSDNI-ISKVTARPVNIISKATARPVNNISEVT 375


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 699 PLICRTTAGSVIINNILVICKNTPSFSFIKFTAIPFSIISATTVGTILNISK 544
           P+I   T+GS I  NI    K  P   FI     P  I+++TT      I+K
Sbjct: 562 PVISAATSGSTIGKNISSPVKKPP--GFISMVYKPIKIVNSTTSSIAEKIAK 611


>SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 474 FTRKPYFKKFSRQSRTPPTVSIRKPQFTNPVKFANSELHENKE 346
           F RK Y+    ++SR PP     +  + NP      EL  N+E
Sbjct: 775 FRRKYYYYDLEKKSRKPPEKDPERFTYENPEYCDIPELENNRE 817


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,342,452
Number of Sequences: 59808
Number of extensions: 422985
Number of successful extensions: 1148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)