Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_E16
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         31   0.19 
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    29   0.76 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   1.00 
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   3.0  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.0  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.3  

>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 363 IYIFIIYCQCAVDFTYN*DVICHVLLSVFQCFVLMMTLLV 482
           +++FII+  C VD  Y  +   H LL V+  F+ ++ LLV
Sbjct: 36  VFLFIIFANCVVDVKYYFEGFSHSLLFVY-FFLTLIILLV 74


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 306 RFTDNLLG--VNYIDFFKA*VIYIFIIYCQCAVDFTYN*DVICHVLLSVFQCFVLMMTL 476
           RF D   G  V++  FF   V + F +   CA+ FT+  DV C V +S+F   V+ + L
Sbjct: 148 RFIDPAWGFAVSWNYFFNYFVTFPFEL-TTCAITFTFWTDVNCAVWISIFLVVVIGINL 205


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 135 VTRTMKSQGGQKC----LSEEAEKYIIQYINICS*WRYPLDSYDLRIIIKGYLDRI 290
           + RTM+S+   K     L + A +++  +I++C    YP  +Y   ++   +LD +
Sbjct: 399 IARTMRSRHSDKVALSGLLDRAMQFLTSFISVCKKHLYPTCNYQQVLVSLSFLDTL 454


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 486 VAPTKSSSIQNIEKLTKVHDRLHLNYR 406
           +A +KSSS  +++K+ K+HD L   YR
Sbjct: 108 LALSKSSSTFDLQKIKKIHDCLLSEYR 134


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 184 KQRNT*YNILIFVHSGDIHLILMTYV 261
           K R+T     IFVHSG I  +L+T V
Sbjct: 14  KVRSTSIEYPIFVHSGSISAMLLTLV 39


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 212 NILYYVFLCFFT*AFLSTLRFHCSCYMSVQNRLTYIKLLSYF 87
           N+ YY+ L F T   ++ LRF     MS  N    +  L+YF
Sbjct: 160 NLRYYLLLTFLTCVVIAYLRFALRT-MSFSNFKELVISLTYF 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,213
Number of Sequences: 5004
Number of extensions: 58284
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)