Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_E16
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   4.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 413 IIGEIDSALTINNKYINNLRFKKV 342
           II  + ++   +N Y NN  +KK+
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKL 326


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 164 STLRFH---CSCYMSVQNRLTYIKLLSYFN*RLIPNFIGFYC 48
           S+ RF+   C   + V N +     +S+FN  L   +I F C
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNC 126


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 164 STLRFH---CSCYMSVQNRLTYIKLLSYFN*RLIPNFIGFYC 48
           S+ RF+   C   + V N +     +S+FN  L   +I F C
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNC 126


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 164 STLRFH---CSCYMSVQNRLTYIKLLSYFN*RLIPNFIGFYC 48
           S+ RF+   C   + V N +     +S+FN  L   +I F C
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNC 126


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 595 ISPRYFCLNWNANCTILNWITKIRLRLNHFDSDIALYSSITTLKIVGFALIHP 753
           IS RY      A+C I    TK+ + +   D      ++ T L  +   +IHP
Sbjct: 193 ISKRYVLTA--AHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHP 243


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 386 TINNKYINNLRFKKVNIIHTK*VISE 309
           T++NK  N LR   +N+I    ++ E
Sbjct: 82  TLSNKEYNMLRTTAINVIRHFGIVGE 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,143
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)