Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_E13
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   2.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   3.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   7.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    23   9.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.5  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 461  ETPGFQIFNKYQGFLFVAEQNHNPFDVVAWHGNYVPYKYDLNNFMVINAVL 613
            + P  Q   +Y  FL   E +H  FD +   G Y+ +K + N+F  I   L
Sbjct: 3285 KVPKKQYLEQYSSFL--CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFL 3333


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 533 FDVVAW--HGNYVPYKYDLNNFMVINAVLYDHCD-PSIFTVLTCPSAKPGIAIA 685
           F V  W    N+ PY+  L NF   N  L  H   PSI T +   ++KP   ++
Sbjct: 206 FSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSLPSIRTNVRYSNSKPSTPLS 259


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 47  LPFDIPSDESVDF 85
           LPFD+P D SVDF
Sbjct: 724 LPFDVPVDNSVDF 736


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 572  KYDLNNFMVINAVL-YDHCDPSIFTVLTCPSAKPGIAIADFVIFPPXWSVQEHTFRPPYY 748
            +Y  N+  ++N  L YD  +P    VL   S K      +       WS+  H  R  Y 
Sbjct: 1432 EYSENHNRLVNGCLEYDSQNPRYNLVLDIDSPK---IFVNLNYLYSIWSIFVHWHRAYYS 1488

Query: 749  HRNCMSEFMGLILGS 793
            H + ++E    I+G+
Sbjct: 1489 HLDYLTEVEYFIMGN 1503


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 22.6 bits (46), Expect(2) = 9.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 357 TSNMYPLVGPSTNTANLIPS*ITAISFGATSIRPNSVVI 241
           + N Y   GP+  T+N  P   + IS  +  +   SV +
Sbjct: 287 SENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVAL 325



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 120 SPAPHTVWSPVTKSTDSSDGMS 55
           +PA +T+ S  +K TD+++ +S
Sbjct: 338 TPAANTIISRSSKPTDTTNSIS 359


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 710  WSVQEHTFRPPYYHRNCMSEFMGLI 784
            W+++   F PPY   +C S+F+  I
Sbjct: 1761 WNIEGSEFPPPYNTVDCRSKFVKTI 1785


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 171  EALHKYTWMAIPCLERGS 118
            +++H++ W ++PCL R S
Sbjct: 1601 KSVHQFPWESLPCLNRQS 1618


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = -3

Query: 562 IVSVPSNYVERIVILFGNK*KPLVLVEDLETRSFFINIVSYRC*KIPRIRQSISSD 395
           ++ +  NYV +    FGN+ +  +L+  ++   F +++  Y C  + +  + IS +
Sbjct: 442 MMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPE 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,750
Number of Sequences: 5004
Number of extensions: 82407
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)