Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_E07
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 117 2e-27
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.007
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.27
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.47
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.62
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.62
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 29 0.82
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 29 0.82
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 2.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.5
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 4.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 5.8
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 7.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.6
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 117 bits (281), Expect = 2e-27
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 17/245 (6%)
Frame = +3
Query: 153 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 317
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 318 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 482
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 483 SSNVIFKCRTCQGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNKYIPP---S 641
+ + +CR C+G+H T CP+K +YI P +
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRA 183
Query: 642 SAGRIPGRDQPPVRREDVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCX 821
+GR G R+D +R++NL + E ++ DL + FG + ++YLAK+K TG
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 822 GFAYV 836
GFA+V
Sbjct: 244 GFAFV 248
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.9 bits (79), Expect = 0.007
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 675 PVRREDVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCXGFAYV 836
P + + I ++ + A E ++DL FGPV L+L ++ TG+ G+A +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALI 56
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 708 ISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCXGFAYV 836
+S L E+DI+ +GP+ ++ + + K TG G+A+V
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFV 146
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 690 DVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCXGFAYV 836
D + +S L N ++ D + GPV + ++K +G G AYV
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 681 RREDVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCXGFAYV 836
++E + + + NL +AD+ + G + ++ L + TG C GF +V
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 189 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 323
PP ++VV+ K D++ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 690 DVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCXGFAYV 836
D ++ + N+ ++ G V+++ + +K TGH GFAY+
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.82
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Frame = +3
Query: 195 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 359
P E +E + +++++ + + + + T + +R S AK+K +KF D S
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351
Query: 360 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 482
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +3
Query: 255 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 434
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 435 ESQRPDDGELDGLKPPSSNVI 497
+ D +D P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.5
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 162 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 338
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 339 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 458
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 162 EVEIDQGVLPPPSEVVENGLKIVTEYKY 245
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 699 AIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCXGFAYV 836
++ + L EA + +L GPV + + ++ T G+AYV
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYV 126
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 195 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 374
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 375 NPATTN 392
PA+T+
Sbjct: 104 APASTS 109
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = +3
Query: 627 YIPPSSAGRIPGRDQPPVRREDVT----AIRISNLXNFAVEADIDDLVKGFGPVHKLYLA 794
YI P + + + DV I ISNL E + +L+K FG + L
Sbjct: 283 YIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
Query: 795 KEKSTGHCXGFAY 833
K + G GF +
Sbjct: 343 KNIADGSSKGFCF 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,110
Number of Sequences: 5004
Number of extensions: 58213
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -