Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_E03
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 59 6e-10
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 30 0.32
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 29 0.55
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 3.9
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 26 6.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 6.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 6.8
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 59.3 bits (137), Expect = 6e-10
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Frame = +1
Query: 226 VRILKKVHRPLCFLCYAVALV---WFVMLANRDFNNETYFSENALLPGLVTNEFNGEYAA 396
+R+ + R L FL ++ L+ W +L + + + SE+ALLPG V F Y +
Sbjct: 9 IRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFENRY-S 67
Query: 397 KQYLTEFEQELEEKYYDTEKIPVPWLVAKMSQLH----LEVYTHNYTLNYPLGQGQIYKG 564
K + + D + + + Q+ L NY++N P G + G
Sbjct: 68 KTVSSSLTAANTWSHLDA-SVGTNTMYDDLEQIFTAMGLPTQKQNYSINIP---GSEFNG 123
Query: 565 TNVYGILRAARTPSLEALVVSAPFRPLSSHQKSTAAGIALMLAFAEFARPQKYWAKDIIF 744
+N LRA R + E+L++ P++ AG+AL ++ ++ + W+KDII
Sbjct: 124 SNFITTLRAPRGDATESLLLCVPWKDHIGQYNE--AGVALAISLLKYFQGWSLWSKDIIL 181
Query: 745 LV 750
++
Sbjct: 182 VI 183
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +1
Query: 343 NALLPGLVTNEFNGEYAAKQYLTEFEQELEEKYYDTEKIPVPWLVAKMSQLHLEVYTHNY 522
N++L +++ E+N K+ L E +E + + E I + ++QLH ++Y
Sbjct: 44 NSILQEIISTEYNYSVDLKKTLNEIIMPIEGQSMEREAIGICTCFKTLNQLHTKLYQQMI 103
Query: 523 TLNYPL 540
+ P+
Sbjct: 104 SSGSPV 109
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 238 KKVHRPLCFLCYAVALVWFVMLANRDFNNETYFSEN 345
K VH P+CFLC V + F N YFSE+
Sbjct: 169 KHVHCPVCFLCSKDEDPEEVDAWKKSFENSPYFSES 204
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = -1
Query: 465 DWYLLCVIILFLQFLLEFSQILLCSILAVELVGNEPRKQSIFRKVSLIIKVSVSQHH 295
DW C+I +F+ F + F +++ +L ++ R +S + +V V+Q++
Sbjct: 1323 DWIRRCIISIFIVFFISFLPLVVHDLLEKGVIRAVARLCKQIFSLSPMFEVFVTQNY 1379
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 393 SILAVELVGNEPRKQ-SIFRKVSLIIKVSVSQHHEPY 286
S+ +E++G+ +K SI + ++I+KVS +H PY
Sbjct: 390 SLEGLEVLGDGGKKVISIMKNQNMIVKVSPYKHRYPY 426
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 315 VSVSQHHEPY*GHSITKEAKRPVNLL*NP 229
VS S HHE H K + P+N++ NP
Sbjct: 94 VSESNHHEKEILHRTCKRYRIPLNIIDNP 122
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 493 AETSWPPATGLVSSLCHNTFPPVPARIQSNTALQ 392
A+TS PP+ + + HN+FP R+Q N +Q
Sbjct: 252 AKTSIPPSHAMQNP--HNSFPASADRLQKNHPVQ 283
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 508 KPLGEAETSWPPATGLVSSLCHNT-FPPVPARIQSNTA 398
KP E + PP++ LVS+ T P VP + +TA
Sbjct: 694 KPASPVEITEPPSSALVSATSPTTNVPIVPEAVHLSTA 731
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,211
Number of Sequences: 5004
Number of extensions: 63293
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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