Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_E03
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0278 - 28111655-28112531,28113896-28114029,28114131-281149...    43   2e-04
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    29   3.1  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    28   7.1  
06_03_0995 + 26704029-26704107,26704543-26704595,26704907-267051...    28   9.4  

>01_06_0278 -
           28111655-28112531,28113896-28114029,28114131-28114992,
           28115636-28115735,28115848-28115939,28116031-28116122
          Length = 718

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
 Frame = +1

Query: 256 LCFLCYAVALVWFVMLANRDFNNETYFSENALLPGLVTNEFNGE--YAAKQYLTEFEQEL 429
           +C     +AL++   LA       TY SENAL+PG     F+ E    A ++    E  +
Sbjct: 33  VCCTAGIIALLFLPSLAKN-----TYLSENALIPGSANTLFSTEDVQEANRFAKGIEAAI 87

Query: 430 EEKYYDTEKIPVPWLVAKMSQLHLEVYTHNY----------------TLNYPLGQGQIYK 561
            E    T +IP  ++  +   L  EVY H +                T N        Y 
Sbjct: 88  GESRGGTTEIP-KFIAQQTKNLGAEVYYHEFLPDSKCFHPLKFFTSMTNNMAAKPNGTYT 146

Query: 562 --GTNVYGILRAARTPSLEALVVSAPFRPLSSHQKSTAAGIALMLAFAEFARPQK--YWA 729
             G N  GI+RA R    EA+V+  P+   +S + +    ++L L F+ F+   +  + +
Sbjct: 147 NFGINTVGIIRAPRGDGKEAIVLVTPY---NSQKVTPNELLSLALGFSVFSLLSRAAWLS 203

Query: 730 KDIIFL 747
           KDI++L
Sbjct: 204 KDIVWL 209


>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 535 PLGQGQIYKGTNVYGILRAARTPSLEALVVSAPFRPLSSHQKSTAAGI 678
           P G G+        G   AAR P+    V+S PF+P+S+  +  A+ I
Sbjct: 73  PDGSGRPAAAFTAAGGAAAARRPNAHGGVLSRPFQPISNRTQKLASHI 120


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 221 FTEPYSGSDKSPIF 180
           +TEPY+GS +SP+F
Sbjct: 47  YTEPYAGSSRSPVF 60


>06_03_0995 +
           26704029-26704107,26704543-26704595,26704907-26705122,
           26705328-26705411,26705498-26705572,26705711-26705794,
           26706179-26706268,26707463-26707558,26707655-26707726,
           26708500-26708604,26708804-26708845
          Length = 331

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 568 NVYGILRAARTPSLEALVVSAPFRPLSSHQKSTAAGIALMLAFA 699
           N+Y I+   +   +E   V+ P  PL+S + S A G+AL+ AFA
Sbjct: 153 NIY-IVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFA 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,232
Number of Sequences: 37544
Number of extensions: 396981
Number of successful extensions: 1031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)