Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_E03
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.44 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 313 DFNNETYFSENALLPGLVTNEFNGEYAAKQYLTEFEQELEEKYYDTEKIPVP 468
           D     YF   +L   L    FN +   K YL +F     +K+Y+   + +P
Sbjct: 275 DLAPSDYFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLP 326


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 469 WLVAKMSQLHLEVYTHNYTLNYPLGQG 549
           WL+A +S +   +YT    + YP   G
Sbjct: 166 WLIALISAIPFAIYTKVNLVEYPPESG 192


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 385 EYAAKQYLTEFEQELEEKYYDTEKIP 462
           ++A  +Y   F++  EEK ++  +IP
Sbjct: 253 KHACAEYRRNFKKMQEEKIFEPHRIP 278


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 601 PSLEALVVSAPFRPLSSHQKSTAAGIA 681
           P +E  + ++ FRPLSS       G+A
Sbjct: 263 PEIEDNLETSLFRPLSSEATDLRMGVA 289


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 537 FRTRSDLQRHKCVWH 581
           FRT + L  HK ++H
Sbjct: 411 FRTLNSLNNHKSIYH 425



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 364 RAQEAEHFQKSKSHY*SLC*PTSRTILGPQHNK 266
           R +E +HFQ   S   +LC    RT+    ++K
Sbjct: 389 RHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHK 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,796
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)