Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_D22
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.20
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 31 0.20
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 1.8
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 28 1.8
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.4
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 3.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 5.6
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 26 5.6
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.6
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 26 7.4
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 7.4
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 7.4
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 9.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.20
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Frame = -1
Query: 558 VPSAEQKQSGRTHWL-GSQSGALFGSSSTVQAFSSDSSLQSGLP------LQNNSFSMQS 400
+PS S + L S S + SSS+ + S SS S P + ++S S S
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSS 299
Query: 399 PL-PQANLPSGQIGSSVFKIGKTFRGFSSLSQLFTLPFQSQVCLSRSKANP 250
P + + S SS F + SS S + P S +S S ++P
Sbjct: 300 PTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSP 350
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 31.1 bits (67), Expect = 0.20
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 458 RIHLCSLVYHYRTILFQCNLRCHKPIYLQDK*VRPFS--RLVKLFVASRVCHSCSLYP 291
R L LV + ++I F+C RC + Y P S R + F+ VC+ CS++P
Sbjct: 300 RESLSILVNYCKSIRFRC-FRCRRVEYFFYLDSNPLSIQRTITHFIKKLVCNECSMHP 356
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -1
Query: 555 PSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 376
PS+ S + S S + SSS+ + SS SS S ++S S S +P +
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 375 SGQIGSS 355
S SS
Sbjct: 215 SSSHSSS 221
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 152 YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 60
+ RTT AHLQ R+L +A E+ IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = -1
Query: 486 SSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFSSLSQ 307
SSS+V SS S L S +S S SPL ++ S S + + + SS S
Sbjct: 36 SSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSS 95
Query: 306 LFTLPFQSQVCLSRSKANP 250
S S S A+P
Sbjct: 96 ASLTSSSSATLTSSSSASP 114
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 399 PLPQANLPSGQIGSSVFKIG 340
P+P+A LPS IG VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -1
Query: 558 VPSAEQKQSGR---THWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQ 388
+PS E+ S R T + + G + + S D++LQS PL+ +S +
Sbjct: 498 LPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITP 557
Query: 387 ANLPSGQIGSSV 352
PS +G S+
Sbjct: 558 TTPPSFNVGESL 569
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +2
Query: 434 KPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQ 598
+P D A DP++ P+ +P+ A + G+ P +VP+
Sbjct: 243 RPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 245 PSGLAFDLDKQTCDWKGKVNNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCIE 412
PSG+ ++ K T W G N + R + + + E C GK+ G +E
Sbjct: 573 PSGVCLEIKKGTFSWSGPGQNAAE-PTLRDIDFVARRGELCCIVGKVGMGKSSLLE 627
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 197 RDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNN 307
R++ +CT S Q CPS LA LDK + KV++
Sbjct: 142 RELQKCTASYYHQNACPSSLA--LDKSISEAFAKVDH 176
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -1
Query: 462 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGF 322
+S LQ P+Q+++F+ +P P +P I ++ +G ++ F
Sbjct: 271 ASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIPNTAM-MGPSYSSF 316
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -1
Query: 297 LPF-QSQVCLSRSKANPDGQVICLRPDLVHLTTSRQSPSVVRRKYSSAGL----PSHN 139
+PF +S LSR+ Q C LV ++ S S+V+R Y S+ + P HN
Sbjct: 1 MPFIESMAPLSRAITRGISQFSCYSNTLVLRSSRNSSSSLVKRSYVSSRVSPKKPQHN 58
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 5.6
Identities = 31/110 (28%), Positives = 45/110 (40%)
Frame = -1
Query: 645 SMLSTFTAPLNVIVTI*GT*FGSIPPGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQA 466
SM+ T T+ I + T S PS+ +S + S+S + SSS +
Sbjct: 135 SMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSS----SKSSSSSSSSSKSSS 190
Query: 465 FSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFSS 316
SS SS S ++S S S P ++ S + SS F T SS
Sbjct: 191 SSSSSSKSSS---SSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSS 237
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 429 LQNNSFSMQSPLPQANLPS-GQIGSSVFK 346
L+ NSF + P+P ++PS I S VFK
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRSHVFK 333
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 446 KDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 553
K +SD VELD + DP+ VLP+ ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 215 TRSGLKQITCPSGLAFDLDKQTCDWKGKV 301
TRS ++ P + +LDKQT D K KV
Sbjct: 461 TRSAPGELVKPQEVIQELDKQTSDIKDKV 489
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 495 LFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGS 358
+FG + +V +S SS SG L++ S ++ Q+ LP+ + S
Sbjct: 397 IFGMNQSVIGANSGSSNSSGSSLKSAPVSPRTAAAQSLLPNSVVSS 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,957
Number of Sequences: 5004
Number of extensions: 70711
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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