Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_D22
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 34 0.12
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523... 31 0.84
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 30 1.9
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 30 2.6
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 30 2.6
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 4.5
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 5.9
04_04_0434 - 25166947-25167867,25167977-25168039,25168146-25168163 29 5.9
02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87... 29 5.9
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 7.8
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 34.3 bits (75), Expect = 0.12
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 410 EKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQ 589
+++L C+G D KD S+ AC +D N P C + + G R+ I N+
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTV----PVTCSVSSVYEIGKGIRV---INLNE 1054
Query: 590 VPQMVTITFNGA-VNVDNIDL 649
+V + N + VN +DL
Sbjct: 1055 ADNLVDVDINSSEVNSGTVDL 1075
>09_04_0426 -
17451731-17451886,17451974-17452079,17452289-17452387,
17452782-17452888,17452985-17453230,17454187-17454461,
17454834-17454886,17455163-17455455
Length = 444
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 407 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEP 583
I E+ N +C+ SD AC+ +D + + DP P C + DG P I P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVP 291
Query: 584 NQVP 595
P
Sbjct: 292 GYDP 295
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 362 VRPFSRLVKLFVASRVCHSCSLYPSSR 282
++PF L V ++CH C+LYP+++
Sbjct: 202 LKPFKVCFILLVMEKMCHVCNLYPNNK 228
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 522 HWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKI 343
H + G + ST SS S +S L + +S + LP+ +LP G + S V I
Sbjct: 1045 HQAITNHGEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDI 1104
Query: 342 G 340
G
Sbjct: 1105 G 1105
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 138 SCATVDPPMNISVSPPKVTAAMSSGALGQVLNR*LARLDWL 260
S A DPP S SPP A S+GA A +DWL
Sbjct: 9 SAAPPDPPPR-SASPPATPVASSAGASSPPAQTNAASIDWL 48
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.1 bits (62), Expect = 4.5
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -1
Query: 585 FGSIPPG-IRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFS 409
FGS G PSA S T G S FGS+ST AF S+ G P ++ F
Sbjct: 79 FGSTSTGAFGQPSAPAFGSMSTGAFGQPSAPAFGSTST-GAFGQPSTQAFGTP-SSSPFG 136
Query: 408 MQSPLPQANLPSGQIG--SSVFKIGKT 334
+P A+ P+ G SS F G+T
Sbjct: 137 SSTPAFGAS-PAPVFGATSSTFGSGQT 162
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 455 SDENACTVELDPNRAPDCDPNQCVLP 532
S EN +++DP+ C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273
>04_04_0434 - 25166947-25167867,25167977-25168039,25168146-25168163
Length = 333
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Frame = +2
Query: 86 RVKRQDDDGAGDEPNADQLCDGRPADEYFRLTTEGDCR----DVVRCTRSGLKQITCPSG 253
R DDDG G D CD + A R E + R DV R L+ +T G
Sbjct: 169 RAHEDDDDGVGGAVFRDIWCDEKEAASLHRSAMEEEARRHSDDVARKELESLEVVTADDG 228
>02_01_0118 +
870911-871203,872559-872679,872975-873092,873218-873354,
873583-873684,873862-873954,875047-875119,875213-875478
Length = 400
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 327 GFSSLSQLFTLPFQSQVCLSRSKANPDGQVICLRPDLVHLTTSRQSPSVVRRKY 166
G+S+ S+L + F S + R A + VIC P +VH +R P +V Y
Sbjct: 249 GYSN-SKLAQIKFSSMLH-RRIPAEAEINVICASPGIVHTNVARDLPKLVVAAY 300
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = -3
Query: 718 DEKRSFNLTTVRIMTITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 557
+E +S + + V+Y+ I +++V+ T KC SN+ + +++ + + +C
Sbjct: 644 NELKSLFSALLEETNLAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,871,453
Number of Sequences: 37544
Number of extensions: 475451
Number of successful extensions: 1408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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