Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D20
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    31   0.48 
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   1.5  
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640...    28   4.5  
11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830     27   6.0  
02_05_1341 - 35801987-35802472                                         27   6.0  

>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 194 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 292
           R  +V WN +   E  EAYR K+     P+RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 152 GCGGAVFYTLRLALRNPDVSWNKKTNPEP 238
           GC  AV  TL  AL   +    KKTNP+P
Sbjct: 385 GCNAAVMSTLLSALVAVEACLGKKTNPQP 413


>11_04_0474 +
           18162538-18163731,18163800-18163855,18163951-18164011,
           18164107-18165495,18166024-18166635,18166706-18166852,
           18166941-18167209,18167322-18167412,18167500-18167757,
           18168376-18168450,18168937-18168945
          Length = 1386

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 228 LVFLFQDTSGLRKARRRV*NTAPPHPIPTHTYRG 127
           L FL +DT G+  A RRV N A P+P    T  G
Sbjct: 671 LKFLNRDTGGVADANRRV-NFAEPNPSKDRTMGG 703


>11_06_0150 - 20640535-20640600,20641299-20641451,20641567-20641830
          Length = 160

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 207 TSGLRKARR-RV*NTAPPHPIPTHTYRG 127
           TS  R A+R R+    PP P PTH  RG
Sbjct: 3   TSAARAAKRARIAAPPPPTPTPTHLRRG 30


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 156 VVELCSILCVWLCVILMYLGTRRPTLNHGRLTGTSSTSSILPSETT 293
           VV L S+LC  +CV  + L  R      G  T T++T++  P+ T+
Sbjct: 2   VVILASLLCALICVAGLALVARCACRRRGAAT-TTTTTTTTPAATS 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,184
Number of Sequences: 37544
Number of extensions: 241013
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)