Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D19
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    26   2.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   8.1  

>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 163 VQARVWEKLRSWFRRCLRVWSGQR 92
           V +++W+KL  W      +W+G+R
Sbjct: 348 VVSQLWDKLERWMENRWPLWNGRR 371


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 248 AQSK*WEXXXXXXRMEIPRRVLSRVYKRSPGSCMGE 141
           A+S  WE      R+ IP+R++  +  R  G+ +G+
Sbjct: 577 AESVYWECSSPDERIRIPQRIIRHILNRHLGNNVGD 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,713
Number of Sequences: 5004
Number of extensions: 18420
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)