Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D17
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.41 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.41 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 135 KKSKXKARCPGXEDVMIVNSRVTVVSPNPSSKRRQKPLR 251
           ++S   +R P        N R TVVSP P+ +R  K ++
Sbjct: 878 QESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 916


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 135  KKSKXKARCPGXEDVMIVNSRVTVVSPNPSSKRRQKPLR 251
            ++S   +R P        N R TVVSP P+ +R  K ++
Sbjct: 916  QESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 954


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 159 SVPXPWTFCTVIPCVLCGIYI 97
           ++P   +FC V+ C    +Y+
Sbjct: 146 TLPLRLSFCVVLACSTATVYV 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,005
Number of Sequences: 438
Number of extensions: 1844
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)