Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D15
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.64 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   2.0  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   3.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   4.5  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 121 WLLARSKFLIPNILF*YNYSSKCSLKFFY 35
           W+LAR KF   N    YNYS+K  +  F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 232 PTTIRLARKIISPLETLFLGGVQITLMFLCWATFLKI 122
           P TI L RK+ S L+   +   ++ L F CW   L +
Sbjct: 73  PFTI-LCRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 155 HVPLLGDILKDLVVSAK*IPNSKHF 81
           HVP+  DI    +V  K   N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 91  ELGIYFALTTKSLRMSPNKGT 153
           E G+ F+L++KSLR+S  KGT
Sbjct: 70  ERGV-FSLSSKSLRLSNRKGT 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,908
Number of Sequences: 5004
Number of extensions: 26630
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)