Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D15
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0808 + 11412981-11413259                                         29   1.9  
06_01_1160 - 9868340-9868360,9868639-9868986                           27   5.7  
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374...    27   5.7  
03_05_0733 - 27241021-27241767                                         27   7.6  

>03_02_0808 + 11412981-11413259
          Length = 92

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 93  IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 197
           +R +LR N + +F    QQR M  +  PPR K   G
Sbjct: 50  VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85


>06_01_1160 - 9868340-9868360,9868639-9868986
          Length = 122

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 108 RANNQIFKNVAQQRNMSVICTPPRNK 185
           +A  Q+ +  A  RNM VICT P  K
Sbjct: 84  QAGRQVGRRPASIRNMRVICTTPNYK 109


>03_06_0084 +
           31536286-31536718,31536907-31536983,31537380-31537428,
           31537778-31538048,31540876-31541104,31541511-31541750
          Length = 432

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 224 HQAGEEDHLTSGNL 183
           HQ  EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365


>03_05_0733 - 27241021-27241767
          Length = 248

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 284 VAVMLDVDQHPGWDGRPAHHHQAGEEDHLTSGNLVS 177
           +AV  DV    G+  R  H H     DHL  G+LV+
Sbjct: 56  LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,056,237
Number of Sequences: 37544
Number of extensions: 176003
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)