Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_D13
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0172 + 1362101-1363708 32 0.49
02_02_0313 - 8866182-8866381,8866470-8866638 32 0.65
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 1.1
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 30 2.6
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 30 2.6
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364... 29 3.5
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 3.5
12_02_0259 + 16527788-16527842,16528014-16528381 28 8.1
>06_01_0172 + 1362101-1363708
Length = 535
Score = 32.3 bits (70), Expect = 0.49
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +1
Query: 241 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 414
L + LR ++ +P +L + P L NI++ G VGI LDA +K+
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 415 LGLIPNLSQFTTSESAQAGVPQAPGKSKM 501
LG+ P++ +TT SA G G K+
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKL 250
>02_02_0313 - 8866182-8866381,8866470-8866638
Length = 122
Score = 31.9 bits (69), Expect = 0.65
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 YYVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 602
++VG GW G G W E+G F D L +K+ P+ L+ D+ G C V
Sbjct: 29 WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 324 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 434
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>08_02_0270 +
15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 676 LSFVIAGRNPTRYRNQSCPTSCSYXLIYTKHIVTKLWTL 792
L F + R P Y + P S+ I T+ I+T+ W L
Sbjct: 388 LQFAVCRRCPRSYHRKCLPREISFEDINTQGIITRAWEL 426
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 29.9 bits (64), Expect = 2.6
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Frame = +3
Query: 153 VQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESP----- 317
+ F+ A ND + L Q Y + + ++ +R K K+E++
Sbjct: 33 ITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLKIEVDGKTVVDV 90
Query: 318 ---GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 470
G+ ++ +W+ G+IS GR W DP+P V YVG+ + W
Sbjct: 91 AGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146
>04_03_0548 -
17035394-17035749,17035761-17036295,17036325-17036458,
17037053-17037134
Length = 368
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +1
Query: 583 DRTTAMFPSQLIPQK*IQCMK*SSAVGRTHNLSFVIAGRNPTRYRNQSCPTSCSYXLIYT 762
D+ TA+ PS+L P +C A F + PT R Q +S Y
Sbjct: 295 DQVTAIRPSRLRPWSKCKC----HAQRHLQQAHFTVLA--PTPMRLQLANSSVRYLAGIA 348
Query: 763 KHIVTKLWTLRX*RSRH 813
+ ++ K+WT R RH
Sbjct: 349 EDVLVKIWTWTQSRKRH 365
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 312 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 449
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 410 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 252
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,196,780
Number of Sequences: 37544
Number of extensions: 527202
Number of successful extensions: 1530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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