Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D11
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    26   0.38 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.1  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 608 SKIFKYRRGNCLEGCWFKCWDFCYSLYSPQNFRSIPDSHNF 730
           SK+       C E C  K  +FC   +S   F  I  S+ F
Sbjct: 231 SKVKSILNKKCCEKCGLKKIEFCRPTFSAARFYGIDFSNTF 271


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 44  RGVHCT*CVPIFNYENKQKC 103
           RG+H    VP + Y+N+ +C
Sbjct: 573 RGIHAEALVPRWCYQNEGEC 592


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 615 YLNIEEGTVLKAAGSNAGTFVIAYTVHK 698
           +LNI+ GT+    GS A   +I     K
Sbjct: 366 FLNIDYGTLYSLFGSTAMNVIILLQFQK 393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,687
Number of Sequences: 336
Number of extensions: 4498
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)