Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D11
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.55 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.7  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +1

Query: 310 VINSHYKKQHDMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSPFTGNHTHLNMPGS 489
           V +SHY   H M    +  + D    K D +  V+LS S++S V    T   TH +M   
Sbjct: 147 VDSSHYPIFHQMEGALVWNRNDTAKMKNDLK-KVALSPSLKSMVDDETTALETHNDMQDI 205

Query: 490 QWGQGHKYLSDHL 528
              +  K++S HL
Sbjct: 206 YSLEETKFVSQHL 218


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 467 VWFPVKGLGTL-LCMDEDRLTAPRQSYLLTYGSTCIVISI 351
           ++F +  +GTL + ++  +LT  + S L+ YG+ C++I +
Sbjct: 228 IFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILV 267


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 668 DFCYSLYSPQNFRSIPDSHNFDC 736
           D+C+ L +P    +  +SH++DC
Sbjct: 112 DYCFLLSTPVECSASTNSHSYDC 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,452
Number of Sequences: 5004
Number of extensions: 73991
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)