Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D11
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706     36   0.027
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    34   0.11 
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    29   3.1  
06_03_0046 - 15852653-15854560                                         28   9.3  

>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
          Length = 187

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 588 GVDLVAILKYLNIEEGTVLKAAGSNAGTFVIAYTVHKIFAPFRIAITLTATPFI 749
           GVD+  +L  + I  G      G   GTF +AY  HK  +P R   T+  TP +
Sbjct: 126 GVDVQDLLGKVGIATGET----GGKVGTFALAYAAHKAASPIRFPPTVALTPVV 175


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = -1

Query: 399 TIIFVNIWVNLYCYINFRHVMLFFIVRINNRTGNISFSVRR-KS--PYFGCVNINNI 238
           T++ +++ + LYCY   +++M+F +  I     N+  SV++ KS    FGC+  +N+
Sbjct: 725 TLVMISVQLYLYCYRKLKYIMIFQVSGIRFMWENVIQSVKKVKSGDKGFGCILAHNM 781


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 175 KQNVHVSPLLKSQSVALKLPTNVVDINASEVGRFSPNRERDISG 306
           K++V  SP   S S +   P +    + S VG   P+R RD+ G
Sbjct: 5   KRSVSPSPSPSSSSASASTPASPARASTSRVGGGVPSRRRDVVG 48


>06_03_0046 - 15852653-15854560
          Length = 635

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 478 MPGSQWGQGHKYLSDHLHSAHYLSLRNEYR 567
           +P  +W      +SDHL   H   +R  YR
Sbjct: 374 IPEHEWDHHRALISDHLFEVHMYEVRTAYR 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,401
Number of Sequences: 37544
Number of extensions: 416843
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)