Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_D10
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 92 7e-20
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 92 7e-20
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 92 7e-20
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 29 1.0
11_06_0478 + 24073295-24074172,24074790-24075090 28 1.3
12_01_0282 - 2088302-2089081 27 3.1
11_01_0273 - 2048527-2049297 27 3.1
07_03_0054 + 12848425-12848593,12850106-12850278 27 4.1
01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412... 26 5.4
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817... 26 7.1
06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543... 26 7.1
04_04_1353 - 32836301-32836340,32836514-32836657,32836948-328370... 26 7.1
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 25 9.4
01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568 25 9.4
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 92.3 bits (219), Expect = 7e-20
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +1
Query: 31 MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 177
M +HK F IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 92.3 bits (219), Expect = 7e-20
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +1
Query: 31 MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 177
M +HK F IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 92.3 bits (219), Expect = 7e-20
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = +1
Query: 31 MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 177
M +HK F IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 43 KXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKR 153
K IIKR+ AK+L+Q P++ + TG +AKR
Sbjct: 214 KETIIKREAAKRLEQTSEEPEYAPLPTGPGAVADAKR 250
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 14 QLDCSKCRPIXRLLLSANWPKS*NKTDPFLSG*GCAQETLF 136
QL C C + LSA WP K D F S G +E +F
Sbjct: 207 QLFCLMCWQVEYQYLSAEWPPPSYKIDAFSSRTGRWEERVF 247
>12_01_0282 - 2088302-2089081
Length = 259
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 174 LCPS-PVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM-GRHFEQSS 16
LCP P TPL + V HP+ LR + +L+N RL+ GR SS
Sbjct: 37 LCPYLPATPLPTSTTVVILHHPHALRRNPLSTLPLLARSLSNLRLIPGRRLLPSS 91
>11_01_0273 - 2048527-2049297
Length = 256
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 174 LCPS-PVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM-GRHFEQSS 16
LCP P TPL + V HP+ LR + +L+N RL+ GR SS
Sbjct: 37 LCPYLPATPLPTSTTVVVLHHPHALRRNPLSTLPLLARSLSNLRLIPGRRLLPSS 91
>07_03_0054 + 12848425-12848593,12850106-12850278
Length = 113
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 204 FNTFTSLQLELCPSPVTPLSVISNSVSCA 118
F T+ S+ +L PSP + L V S+SC+
Sbjct: 8 FTTYVSIVPDLRPSPRSHLCVNHGSISCS 36
>01_03_0025 +
11739930-11740493,11740820-11741020,11741143-11741235,
11741355-11742125
Length = 542
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 109 VRMRTGNTIRYNAKRRHWRRTKLKL 183
++ R +R + RRHWRR L L
Sbjct: 75 IKARNSPLLRVSPFRRHWRRLSLSL 99
>08_02_0946 +
22880399-22880600,22881588-22881650,22881786-22881790,
22882143-22882253,22882339-22882443,22882529-22882609,
22883236-22883247,22883680-22883733,22884476-22884586,
22884789-22884935
Length = 296
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 183 QLELCPSPVTPLSVISNSVSCAHPYPLRNGSVL 85
Q LCP P+T +I N C YP + VL
Sbjct: 219 QSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVL 251
>06_03_0375 +
20052687-20053214,20053943-20054110,20054272-20054354,
20054541-20054610,20054973-20055077
Length = 317
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 168 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQF 64
PSP P + ++ + A LR G V F FGQF
Sbjct: 53 PSPSEPTTAAASPATAAAAGALRVGIVGFGNFGQF 87
>04_04_1353 -
32836301-32836340,32836514-32836657,32836948-32837023,
32838281-32838351,32838552-32838623,32839347-32839474,
32839561-32839637,32839712-32839805,32840239-32840324,
32840836-32840911,32841004-32841318
Length = 392
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -1
Query: 165 SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSS 16
S V ++++++ ++ + P P + LFG+F N L R E S
Sbjct: 233 SKVLKVAILNSPLTVSSPVPGLFNQLRLPLFGEFTCQNAVLAERFIEAGS 282
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 54 Y*AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKD 170
Y A++ Q E +Q+HS AH+ H+ +S KD
Sbjct: 1679 YTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKD 1717
>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
Length = 407
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 107 G*GCAQETLFDITLRGVTGEGQSSSCKLV 193
G A T+FDIT G +G++ S K V
Sbjct: 36 GLAAAVNTVFDITELGAVADGKTDSTKAV 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,715,950
Number of Sequences: 37544
Number of extensions: 93187
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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