Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D09
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_25079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_35679| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)                 28   8.2  

>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +1

Query: 262 TQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQFPNIGLGLDRPLLEW 441
           TQ G   +F   LS G+ + H+V+        +PG+   ++H P  P  GL  D   L  
Sbjct: 617 TQPGIPSQF---LSPGQ-APHMVLPPGSPVQQVPGYQPAYLHTPYQPQYGLNKDVATLSH 672

Query: 442 LDKYTFPLEKKYSDTVFASKVYDQ 513
              +T P   + S    A + Y Q
Sbjct: 673 ARSHTPPTPPRTSSPALA-QAYTQ 695


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 337  LSDSQLIIPGFIDCHIHAPQFPNIGLGLDRPLLEWLDKYTFPLEKKYSDTVFASKV 504
            LS   L+  GF+ C  +   F ++   LD+PL++  D +TF +    S  ++ + V
Sbjct: 2784 LSYPSLVYTGFVGCIRNLVDFGDM-YDLDKPLVQLYDVHTFYMGDSSSTDIYITDV 2838


>SB_25079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 745 LIQPVVTPRFAVSCDHQLXSGLAMIANKYGC 837
           ++QPV+  R+   C  Q  S +AM    YGC
Sbjct: 164 ILQPVIITRYIRVCPMQYQSHIAMRVEIYGC 194


>SB_35679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 658 NDAGYYNSTEKELQDTEEFVQKVLXYKNELIQPVVTP 768
           +D GY+N T+ +  + +    + +  +N  +QP+ TP
Sbjct: 35  SDVGYHNITDLKTPNIDRLAGEGVVLENYYVQPICTP 71


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 232 GFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQ 396
           G++ +++GKI Q   IEE    ++  +      I  ++  +I+PG +D H+H  Q
Sbjct: 19  GYIKVKDGKICQ---IEETIPDVAQIRDENSCKIIDAEELVIMPGVVDSHVHINQ 70


>SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)
          Length = 378

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 262 TQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQFPNIG 411
           T +  I E  ELL     S H V NL DS  +   F+D   H+     +G
Sbjct: 264 TPRQCILEPGELLFVPHGSPHFVENLEDSLAVSANFVDLSNHSAVLEELG 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,353,739
Number of Sequences: 59808
Number of extensions: 481469
Number of successful extensions: 1329
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)