Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D09
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical p...    30   1.8  
AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z82058-4|CAB04869.1|  197|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81545-3|CAB04447.1|  178|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z82267-6|CAB05189.2|  133|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical
           protein T12A2.1 protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 250 NGKITQKGSIEEFEELLSA-GKFSEHIVINLSDSQLIIPGFIDCHIH 387
           NGK +  G++   E  L   G   E++ I  S+  + IPGF+D H H
Sbjct: 49  NGKFSYIGNLNGAENKLKGEGVEMENLKIIDSNGGIAIPGFVDGHSH 95


>AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical
           protein B0238.7 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 565 SLHLDGTLELVKSVLKYHQRAFVGKVSMNLQNDA 666
           S+   GTL+ VKS +KY  + ++G  S N  NDA
Sbjct: 418 SVFNSGTLDAVKSYVKYGNKVYLG--SFNYFNDA 449


>Z82058-4|CAB04869.1|  197|Caenorhabditis elegans Hypothetical
           protein T27C5.8 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 558 LWIITFGWYIRAS 596
           LW++T GWY+ AS
Sbjct: 42  LWVVTIGWYVAAS 54


>Z81545-3|CAB04447.1|  178|Caenorhabditis elegans Hypothetical
           protein F49H6.3 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 558 LWIITFGWYIRAS 596
           LW++T GWY+ AS
Sbjct: 42  LWVVTIGWYVAAS 54


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 742 ELIQPVVTPRFAVSCDHQLXSGLAMIAN 825
           ++I+P++ P++ V C H     +A +AN
Sbjct: 450 DVIEPILKPQWYVKCAHMAEKAVAAVAN 477


>Z82267-6|CAB05189.2|  133|Caenorhabditis elegans Hypothetical
           protein F38C2.2 protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 190 YAHSENKRQLSVCFGFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDS 348
           YAH  + R+LS     L  +N  I Q  +IEE   L+S  K     + NL+ S
Sbjct: 75  YAHGGSVRKLSKIATLLLAKNHIIMQAKAIEELSILVSQLKRKSENLENLNKS 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,687,499
Number of Sequences: 27780
Number of extensions: 389416
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)