Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D08
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    60   4e-10
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    28   1.2  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   3.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.0  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.0  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    26   6.6  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   8.7  

>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 32/111 (28%), Positives = 53/111 (47%)
 Frame = +3

Query: 417 GDDAWFATNFQNXXXXXXXXXXXXWRAYGIDPGEFSSYLMRTCERLVQMGHFKLSEPGDL 596
           G+DA+     +N            W   GIDP  FS  L+R  +++          P  L
Sbjct: 50  GEDAFINLRNENYILNAVFDGVGGWANVGIDPSIFSWGLVREIKKVFNNSDEFQPSPLTL 109

Query: 597 LAKSYYELLEHKKPILGSSTACVMILDRNESLMRAANIGDSGYMVVRXGRV 749
           L+K+Y  L +      GSSTAC+ + +     + + N+GDSG++++R G +
Sbjct: 110 LSKAYAALKKSNTVEAGSSTACLTLFNCGNGKLHSLNLGDSGFLILRNGAI 160


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 245 LHRLIVSSHFITDLLHPSTHYQRFQNDEQPNPMLCT 138
           LH  I S+ F + LLH + +Y R Q   +   +LCT
Sbjct: 378 LHYKIQSTGFKSQLLHEAANYWRKQQSCEAKLLLCT 413


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 540 TCERLVQMGHFKLSEPGDLLAKSYYELLEHKKPILGSSTACVMI 671
           TC++   +       P +LLAK   E LE K PIL   +  +++
Sbjct: 539 TCQKEESVDFLLKMVPMELLAKILLEKLESKNPILIEPSIYILV 582


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +3

Query: 531 LMRTCERLVQMGHFKLSEPGDLLAKSYYELLEHKKPILGSSTACVMIL 674
           L+   ++LVQ    KLS   +LL K  ++ L+  K  L SST+CVM L
Sbjct: 542 LLPIADKLVQE---KLSSCKNLL-KVLWDCLDDVKDDLSSSTSCVMDL 585


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 582 EPGDLLAKSYYELLEHKKPILGSSTACVMIL 674
           E G L+A  +  L  HK+ +L + T C+ ++
Sbjct: 339 EFGGLIAFGFLSLFIHKRMVLATITTCIALI 369


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 479 SICNTNYICILKVSCKPSVVTKLSFTSSPIGNVFRKTT 366
           +ICN +Y+C +++   P V  K S        +F+  T
Sbjct: 250 AICNKSYMCNIQLEQSPEVSVKSSLPKYSNEPIFQSKT 287


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 52  CLERGYLCSKYQINFY-SITQFKFG 123
           C E G LCS+Y I  Y ++  FK G
Sbjct: 80  CTEEGDLCSEYSIRGYPTLNVFKNG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,834
Number of Sequences: 5004
Number of extensions: 58505
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)