Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_D08
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 46 3e-05
02_05_0050 - 25430002-25430961 42 5e-04
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150... 41 0.001
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 35 0.060
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 33 0.18
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 31 1.3
02_04_0555 - 23840634-23841035,23841388-23841501,23841742-238418... 30 1.7
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 29 3.0
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954... 29 5.2
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217... 28 9.1
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 28 9.1
04_04_0071 - 22513684-22513697,22514052-22514328,22514417-225146... 28 9.1
>03_06_0399 - 33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +3
Query: 489 WRAYGIDPGEFSSYLMRTCERLVQMGHFKLSEPGDLLAKSYYELLEHKKPILGSSTACVM 668
W +G+D G ++ LM ++ +P +L K+Y GSSTAC++
Sbjct: 1065 WADHGVDAGLYAKELMSNSMSAIKDEPQGTIDPSRVLEKAYTCTKAR-----GSSTACIV 1119
Query: 669 ILDRNESLMRAANIGDSGYMVVRXGR 746
L E + A N+GDSG+++VR GR
Sbjct: 1120 AL--KEQGIHAVNLGDSGFIIVRDGR 1143
>02_05_0050 - 25430002-25430961
Length = 319
Score = 41.9 bits (94), Expect = 5e-04
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 492 RAYGIDPGEFSSYLMRTC-ERLVQMGHFKLSEPGDLLAKSYYELLEHKKPILGSSTACVM 668
R G+D G FS LM + +LV P LL ++Y E LE G STA ++
Sbjct: 105 RRVGVDAGAFSRGLMTSAFAQLVTAEPGTPVCPYTLLERAYEETLESGAQ--GGSTAVIL 162
Query: 669 ILDRNESLMRAANIGDSGYMVVRXGRV 749
L + +++R A IGDS + V+R GRV
Sbjct: 163 SL-ADGNVLRWAYIGDSAFAVLRDGRV 188
>10_06_0136 -
11114409-11114576,11114656-11114784,11114873-11115016,
11115130-11115299,11116441-11116528,11116590-11116652,
11116678-11116799,11118506-11118671
Length = 349
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 489 WRAYGIDPGEFSSYLMRTCERLVQMGHFKLS-EPGDLLAKSYYELLEHKKPILGSSTACV 665
W GI+ G ++ LM C++ + +P +L+K+ E H GSST V
Sbjct: 143 WSFEGINAGLYARELMDGCKKFIMENQGAADIKPEQVLSKAADEA--HSP---GSSTVLV 197
Query: 666 MILDRNESLMRAANIGDSGYMVVRXGRV 749
D + A+NIGDSG++V+R G V
Sbjct: 198 AHFDGQ--FLNASNIGDSGFLVIRNGEV 223
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 35.1 bits (77), Expect = 0.060
Identities = 27/116 (23%), Positives = 50/116 (43%)
Frame = +3
Query: 402 RKGQFGDDAWFATNFQNXXXXXXXXXXXXWRAYGIDPGEFSSYLMRTCERLVQMGHFKLS 581
RK + G + F N + W ++P FS LM ++
Sbjct: 55 RKAETGGEDAFFVNGDDGGVFAVADGVSGWAEKDVNPALFSRELMAHTSTFLKDEEVN-H 113
Query: 582 EPGDLLAKSYYELLEHKKPILGSSTACVMILDRNESLMRAANIGDSGYMVVRXGRV 749
+P LL K++ +GS+T + +L++ +++ A++GD G V+R G+V
Sbjct: 114 DPQLLLMKAHAATTS-----VGSATVIIAMLEKT-GILKIASVGDCGLKVIRKGQV 163
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 645 GSSTACVMILDRNESLMRAANIGDSGYMVVRXGRV 749
GSST V D ++ A NIGDSG++V+R G +
Sbjct: 407 GSSTVLVAHFDGQ--VLHACNIGDSGFLVIRNGEI 439
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 582 EPGDLLAKSYYELLEHKKPILGSSTACVMILDRNE 686
EPGD + Y L+E + +LGSST C+++ + +E
Sbjct: 74 EPGDYIVAMDY-LMEKESLLLGSSTGCLLLYNVDE 107
>02_04_0555 -
23840634-23841035,23841388-23841501,23841742-23841844,
23842415-23842467,23842544-23842644,23842702-23842879,
23842998-23843120,23843515-23843656,23843854-23843959,
23844236-23844305,23844430-23844588,23845229-23845329,
23845410-23845503
Length = 581
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 615 ELLEHKKPILGSSTACVMILDRNESLMRAANIGDSGYMVVRXGR 746
E + +K P STACV+I+ N+ + N+GDS ++ + G+
Sbjct: 224 EAVSYKLPSYEGSTACVVIIRGNQ--ITVGNVGDSRCVLSKNGQ 265
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 627 HKKPILGSSTACVMILDRNESLMRAANIGDSGYMVVRXGR 746
++ P+ STACV+I+ N+ + N+GDS +V G+
Sbjct: 310 YRAPLYEGSTACVVIIRGNQ--ITVGNVGDSRCVVSHNGQ 347
>01_06_1233 -
35594510-35594687,35594985-35595100,35595364-35595463,
35595536-35595603,35596940-35597071
Length = 197
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 95 FIQLHNLNSAYSTFTYIT-WGLVVHHFEIFG 184
F L NL++ YS + + WG +H+F+ FG
Sbjct: 118 FYILENLSNRYSPYLQLMCWGRYMHYFQSFG 148
>07_01_0303 -
2171796-2172611,2173133-2174062,2174659-2175132,
2175569-2175609,2176298-2176337
Length = 766
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 591 DLLAKSYYELLEHKKPILGSSTACVMILDRNESLMRAANIGDSGYMVVR 737
DLL KS+YE+ E K ++ S+ +++LD E L R +G ++ R
Sbjct: 462 DLLCKSFYEVAE--KAVV-SNELLMLVLDSVEELKRKLVLGLDSHISAR 507
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 289 LRRARESNLPVQKIDCIV*LLVHTLSPTFYTQALITKDFKMMN 161
LR+ + LP++KI CI + H L ++Q +I +D K N
Sbjct: 385 LRKLQRQKLPLEKIICIALDIAHGLE-YIHSQRVIHRDVKPEN 426
>04_04_0071 -
22513684-22513697,22514052-22514328,22514417-22514659,
22515119-22515157
Length = 190
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +3
Query: 576 LSEPGDLLAKSYYE----LLEHKKPI-LGSSTACVMILDRNESLMRAANIGDSGYMVVRX 740
L++P + K+Y + +L H + G STA IL L AN+GDS ++++
Sbjct: 98 LTQPDRAIIKAYEKTDQAILSHTPDLGQGGSTAVTAILLNGRKLW-VANVGDSRAVLLKG 156
Query: 741 GR 746
GR
Sbjct: 157 GR 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,525,083
Number of Sequences: 37544
Number of extensions: 346460
Number of successful extensions: 630
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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