Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D08
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 36/100 (36%), Positives = 49/100 (49%)
 Frame = +3

Query: 351 LVSVVCGFPKDIANGRTRKGQFGDDAWFATNFQNXXXXXXXXXXXXWRAYGIDPGEFSSY 530
           LV+V CGF KD    + R   FG+DA+F T                WR YGID   FSS 
Sbjct: 35  LVAVCCGFSKDYHTSKKRFA-FGEDAYFITENLFSNVLGVADGVGGWRQYGIDSSLFSSQ 93

Query: 531 LMRTCERLVQMGHFKLSEPGDLLAKSYYELLEHKKPILGS 650
           LM++C+R V+ G      P  ++  ++ EL E K  +  S
Sbjct: 94  LMQSCQRFVKEGRLSALSPIAIIKNAFQELTELKASVFVS 133


>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 515 TRINSICSPA-TNSICNTNYICILKVSC-KPSV 423
           T  N  C PA  +  CN+NY+C   + C +P+V
Sbjct: 73  TACNKTCYPACVHGTCNSNYLCDCDLGCLEPTV 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,208,298
Number of Sequences: 59808
Number of extensions: 430680
Number of successful extensions: 809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)