Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D08
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-4|CAB07860.1|  330|Caenorhabditis elegans Hypothetical pr...   116   2e-26
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z93785-4|CAB07860.1|  330|Caenorhabditis elegans Hypothetical
           protein W09D10.4 protein.
          Length = 330

 Score =  116 bits (279), Expect = 2e-26
 Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
 Frame = +3

Query: 351 LVSVVCGFPKDIANGRTR---KGQFGDDAWFATNFQNXXXXXXXXXXXXWRAYGIDPGEF 521
           +++   GFPKD+ NG +    KG FGDDAWF + F+N            WR YGIDP  F
Sbjct: 69  VIASCAGFPKDMLNGPSTVLDKGVFGDDAWFISRFKNTFVVGVADGVGGWRKYGIDPSAF 128

Query: 522 SSYLMRTCERLVQMGHFKLSEPGDLLAKSYYELLEHKKPILGSSTACVMILDRNESLMRA 701
           S  LM+ CE+ VQ G F   +P  LL  ++    E  +P+ GSSTACV+++  ++  + +
Sbjct: 129 SRRLMKECEKRVQKGDFDPQKPESLLDYAFRASAEAPRPV-GSSTACVLVV--HQEKLYS 185

Query: 702 ANIGDSGYMVVRXGRV 749
           AN+GDSG+MVVR G++
Sbjct: 186 ANLGDSGFMVVRNGKI 201


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 515 TRINSICSPATNSICNTNYICILKVSCKPSVVTKLSFT 402
           TR N++C  + N++C +   C +   C   +   +SF+
Sbjct: 717 TRSNAVCQCSPNNVCPSGASCTMGTCCSSGISPIVSFS 754


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 518 FTRINSICSPATNSICNTNYICILKVSCKPSVVTKLSFTSSPIGN 384
           FT  N+IC P T  + N   I  LK + + S  TKL   +S +G+
Sbjct: 176 FTNANAICIPTTLLLVNLVIIIHLK-AVRHSTYTKLFQKTSAVGS 219


>U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical
           protein K08B5.1 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 20  LMVACYCCLVCA*NEGTYVQNIKSIFIQLHNLNSAYSTFTYIT--WGLVVHHFEIFGNEC 193
           L+V C   ++C  N G  V  +   FI     +     F   +  +GLV+ H E+ G  C
Sbjct: 65  LLVLCISAIIC--NTGITVDCLYKFFISNVMPDYMQCDFQVFSPQYGLVIRHIEMLGAMC 122

Query: 194 L 196
           L
Sbjct: 123 L 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,214
Number of Sequences: 27780
Number of extensions: 331384
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)