Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D07
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   3.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 217 LKTTMFQYQGSDSYNCTHYSKRYYAI 140
           LKT M  + G   Y+C+H  +++  +
Sbjct: 25  LKTHMRLHTGEKPYHCSHCDRQFVQV 50


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 24  KLKNNCF*QIS*SQKCSDCPLEK 92
           K  NNC   +   +KC +C L+K
Sbjct: 224 KYGNNCEIDMYMRRKCQECRLKK 246


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 24 KLKNNCF*QIS*SQKCSDCPLEK 92
          K  NNC   +   +KC +C L+K
Sbjct: 21 KYGNNCEIDMYMRRKCQECRLKK 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,043
Number of Sequences: 438
Number of extensions: 1334
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)