Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_D01
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    28   1.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   2.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   3.9  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    26   5.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   5.2  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    26   5.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   5.2  

>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 445 STQIEGEPE--LGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSP 573
           + +I+G PE  LGC  Y++  N +NL V     K  Y+A  +  P
Sbjct: 366 AAKIDGVPEYALGCHNYLNLPNIANLLVNPRTGKHGYVAKFYLEP 410


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 491 TYSKQPSSGSPSICVELLFSLVFSNLYSFS 402
           +YS++P   SPS  ++  FS V S L  FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = -2

Query: 181 DKHFQYRAILHRMFYKNDGPKLYLYFLL*EYQKTMFGLRYLIAPFSRLL 35
           DK+  Y  + HR+  + + PK+++   L +YQ  + GL ++++ ++  L
Sbjct: 842 DKNLDYFKVAHRIHEEVEQPKIFVGGTLKDYQ--LKGLEWMLSLYNNNL 888


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 196 PNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISYGSEMEIDKK 375
           P + D      + D  + +     E +  I  L   I++  +GS +         + D  
Sbjct: 15  PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74

Query: 376 QKIVRLTKSLKEYKFENTR-ENSNSTQIEG 462
           Q+++   KSL E  FE  R E ++ + ++G
Sbjct: 75  QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 580  LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFXVHKAILAAHSDVFKAMF 744
            L L   +K++ VH F   +  +    F+ V +  EKF   K  LAA +   +++F
Sbjct: 996  LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 277 GDIFLLHIFIQRYCEGSFSISISYGSEMEIDKKQKIVRLTKSLKEYKFENTRENSNSTQI 456
           G++FLL   +QR    + S+  S+  E  I+ K +      S+   ++E ++    + QI
Sbjct: 14  GELFLLPSHLQRMKASAKSLGYSWPGEQYIENKLREAVQDTSMARVRWELSKAGDVTVQI 73


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 361 EIDKKQKIVRLTKSLKEYKFENTRENSNSTQIEGEPELGCLEYVSTYNFSNLDVG 525
           +ID   ++ R  K ++  K +N R +++   +  E      +YV  +NF N  VG
Sbjct: 292 KIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,768
Number of Sequences: 5004
Number of extensions: 75827
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)