Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C24
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 380 e-106
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 218 7e-58
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 217 2e-57
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 200 2e-52
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.47
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.47
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.62
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 1.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.5
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.4
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.8
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 5.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 7.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.6
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 7.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 380 bits (934), Expect = e-106
Identities = 171/250 (68%), Positives = 200/250 (80%)
Frame = +2
Query: 89 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 268
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 269 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 448
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 449 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 628
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 629 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLXSLTMSGVTTCL 808
EPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHL S M+GVTT
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSF 240
Query: 809 RFPGXLNADL 838
RFPG LN+DL
Sbjct: 241 RFPGELNSDL 250
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 218 bits (533), Expect = 7e-58
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Frame = +2
Query: 89 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 250
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 251 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 430
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 431 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 610
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 611 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLXSLTMS 790
VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L + +S
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVS 240
Query: 791 GVTTCLRFPGXLNADL 838
+T LRF G LN DL
Sbjct: 241 SITASLRFAGSLNVDL 256
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 217 bits (529), Expect = 2e-57
Identities = 103/252 (40%), Positives = 148/252 (58%), Gaps = 2/252 (0%)
Frame = +2
Query: 89 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 262
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 442
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 443 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 622
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 623 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLXSLTMSGVTT 802
VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L + +S +T
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITA 240
Query: 803 CLRFPGXLNADL 838
LRF G LN DL
Sbjct: 241 SLRFEGSLNVDL 252
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 200 bits (488), Expect = 2e-52
Identities = 96/252 (38%), Positives = 148/252 (58%), Gaps = 3/252 (1%)
Frame = +2
Query: 92 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 271
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 272 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 445
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 446 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 622
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 623 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLXSLTMSGVTT 802
VV+PYN+ L++ +L N D +DN AL I L PT+ N L S MS TT
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTT 241
Query: 803 CLRFPGXLNADL 838
LR+PG +N DL
Sbjct: 242 TLRYPGYMNNDL 253
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.47
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +3
Query: 393 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 572
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 573 ES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRL 707
+ ++ P P + S+++ +R S L QT T+ T +
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR-SHSPVLLTPQTLSTSETKHI 320
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.47
Identities = 30/96 (31%), Positives = 45/96 (46%)
Frame = +3
Query: 483 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS 662
+S+L P + P + SS+ + T T S T T SP P T + T + +S
Sbjct: 184 SSSLSTP-ITPTVPPTSTSSTSIPIPPTSTSS-TDTNSSPLPTTSTSCTTSTSIPTGGSS 241
Query: 663 *LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 770
L T PT T +TS++++ P PPT T +T
Sbjct: 242 SLSTPITPTVPPT---STSSTSI---PIPPTSTSST 271
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.62
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 672 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 770
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/102 (23%), Positives = 53/102 (51%)
Frame = +3
Query: 420 SSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*S 599
SS T ++ S+ + + + + +S+ S ++ + SSS S S+ + S + + S
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 600 PRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSAS 725
P + SS+H+ S +S + ++P++S++ + T S+S
Sbjct: 207 SVPITSSTSSSHSSSSSSSSS-SSSSSRPSSSSSFITTMSSS 247
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.5
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 417 LSSLTRSSM*SAKNQNLAIAYRASNLHIPSVA--APGPVWAPSSSQRSVKSTPTES*THT 590
L+S T SS+ S+ + + S+ S A + + SSS S S+P+ S + T
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229
Query: 591 Q*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 770
S ++ S + S +S + + TAS++ ++ S+ S+ PT T +T
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSST 289
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 392 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 481
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 216 SWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSA 320
S +AS PP A+ + SST SPAPW A
Sbjct: 396 SGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPA 430
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 128 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 229
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 323 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 424
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 465 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 560
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 72 KITYTK*GKSFIYRPANVV 128
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/65 (26%), Positives = 21/65 (32%)
Frame = -1
Query: 287 RREWRGARTCRRRLHCSIH*CAPTASQSPHGRHRWGRCRARQR*SPRT*LQSGYHIGRPV 108
R R C + L C H C + ++R QS H G P
Sbjct: 693 RENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752
Query: 107 DERFP 93
DER P
Sbjct: 753 DERIP 757
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 186 PVPTMGTLT----CSWSASMYTTMKPPAASTCPAPFSSTWSPAP 305
P+PT + S S T P +A+T P P S+T P P
Sbjct: 544 PIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTKPTP 587
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 621 LSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPHPP-TVTLTTXFPSQCLVS 797
LSS + M+L + + P + T+ + LSN P PP + + PS S
Sbjct: 224 LSSMNEMQLLASAAANQLDAAPRITPTKSSGVNLMPLSNAPSPPKQMNVVGSLPSSSNTS 283
Query: 798 PLALGS 815
P L S
Sbjct: 284 PNHLAS 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,715
Number of Sequences: 5004
Number of extensions: 71975
Number of successful extensions: 268
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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