Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C24
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 425 VDSVLDVVRKESESCDCLQG 484
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 219 WSASMYTTMKPPAASTCPAPFSSTWSPAPWTL 314
           W  S+ T M+   A+ C A +       PW L
Sbjct: 35  WRDSLPTKMRELNATACAALYERVEWSGPWIL 66


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 671 FQLAGELRESHCM 633
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 571 QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 705
           Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 227 CAPTASQSPHGRHRWGRCRARQ 162
           C+P   Q+P  R   GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = -2

Query: 364 EDEVVRTEDLSERSGADRVHGAGLQVDENGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 185
           E+  +R +++    G D     G   DE+ AG   A+    V    A          GTG
Sbjct: 178 EERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTG 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,522
Number of Sequences: 438
Number of extensions: 5292
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)