Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C20
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564... 56 3e-08
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931... 44 1e-04
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 30 2.0
04_03_0954 - 21124183-21124507,21124645-21124682,21124781-21124948 30 2.6
12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696... 29 3.5
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 29 3.5
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879... 29 3.5
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 29 4.6
>03_06_0707 -
35655084-35655215,35656088-35656229,35656358-35656485,
35656852-35656944,35657183-35657252,35657324-35657445,
35658143-35658265,35659453-35659710,35659995-35660074,
35660244-35660389,35660773-35660906,35661001-35661137,
35663013-35663135,35663521-35663590,35663925-35664050,
35664166-35664393
Length = 703
Score = 56.4 bits (130), Expect = 3e-08
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +3
Query: 573 GVYIWGSVGGGKTMLMDLFYDTVP--IKEKLRVHFNSFMLNIHARIHEL 713
G+Y++G+VG GKTMLMD+FY IK + R HF+ ML IH +H++
Sbjct: 312 GIYLYGNVGSGKTMLMDMFYGATEGLIKHRRRFHFHEAMLEIHDHMHDV 360
>08_01_0996 +
10089800-10090149,10090426-10090483,10092922-10093126,
10093201-10093280,10093377-10093477,10093566-10093691,
10094099-10094101,10094736-10094763,10094875-10094961,
10095187-10095273,10095346-10095411,10095511-10095603,
10095688-10095744,10095834-10095959,10096049-10096139,
10096233-10096321,10096951-10097141,10097224-10097322,
10098814-10098829
Length = 650
Score = 44.4 bits (100), Expect = 1e-04
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Frame = +3
Query: 372 GPWQAYTQKV-NRKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGS-------FF 527
GP Y +++ + + + D Q +QHLQ++Y+E+ E ++ S +
Sbjct: 210 GPMVEYERRIASGELVDGDNFQIDTIQHLQRLYEELVENEEACQLDRYQSSEKSGRRRWL 269
Query: 528 NFFXXXXXXXXXXXXGVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNS 677
G+Y++G VG GKTMLMDLFY+ + E R H S
Sbjct: 270 WSRLITQPSTYSPVQGLYMYGGVGTGKTMLMDLFYEQLCCLEISRKHQES 319
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 770 DPIPPVAADITQESWLICXDEF 835
DP+ VAA+I+ E+ ++C DEF
Sbjct: 353 DPLEVVAAEISDEAIILCLDEF 374
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 387 YTQKVNRKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 533
Y Q + A S P + + + + +SN +R II+ + GS NF
Sbjct: 79 YDQDKSGSAESPKPRSRLNITYFSNLIEGLSNEQRSIIENSSFGSLLNF 127
>04_03_0954 - 21124183-21124507,21124645-21124682,21124781-21124948
Length = 176
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 387 YTQKVN--RKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 533
+TQ +N R A S P + + + + +SN +R II+ GS NF
Sbjct: 69 HTQNMNKSRSAESPKPRSRLNITYFSNLIEGLSNEQRLIIENSAFGSLLNF 119
>12_02_0128 -
13969118-13969222,13969329-13969460,13969558-13969671,
13971843-13971941,13972035-13972171,13972505-13972598,
13973248-13973355,13973442-13973537,13973673-13973845,
13974818-13975172,13975308-13975442,13975524-13975667,
13975762-13976436,13976552-13976617,13976710-13976877
Length = 866
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 387 YTQKVNRKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 533
Y Q + A S P + + + + +SN +R II++ GS NF
Sbjct: 84 YDQDQSGSAESPKPRSRLNITYFSNLIEGLSNEQRTIIEKSAFGSLLNF 132
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 387 YTQKVNRKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 533
Y Q + A S P + + + + +SN +R II++ GS NF
Sbjct: 84 YDQDQSGSAESPKPRSRLNITYFSNLIEGLSNEQRSIIEKSAFGSLLNF 132
>03_02_0482 +
8798931-8799024,8799118-8799253,8799435-8799506,
8799583-8799654,8799798-8799869,8800133-8800204,
8800530-8800627,8800892-8801062,8801141-8801473,
8802494-8802739,8802884-8803017,8803132-8803344
Length = 570
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 517 DRFLISSRSQTQ*RLMLPKVFTSGVVLGVVKQC*WICFMILCQLKKSSEFILIHLC 684
D F+ + RL++ V T G +L V C W CF+ KK + LC
Sbjct: 206 DDFINRRNGKNSTRLVISAVATVGALLLVALMCFWGCFLYKNFGKKDIHGFRVELC 261
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 387 YTQKVNRKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 533
Y Q + A S P + + + + +SN +R II+ GS NF
Sbjct: 84 YDQDKSGSAESPKPRSRLNITYFSNLIEGLSNEQRSIIENSAFGSLLNF 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,013,686
Number of Sequences: 37544
Number of extensions: 384208
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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