Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C20
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical ...   103   2e-22
Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z70271-5|CAA94233.2|  443|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF125971-4|AAD14766.1|  381|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF031477-1|AAC15586.1|  443|Caenorhabditis elegans delta6-fatty-...    28   9.5  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    28   9.5  

>AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical
           protein C30F12.2 protein.
          Length = 445

 Score =  103 bits (247), Expect = 2e-22
 Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
 Frame = +3

Query: 384 AYTQKVNRKALSKDPHQERVVQHLQKVYQEISNYE---RPIIQEQNIGSFFNFFXXXXXX 554
           AY++KVN   L +D +Q +++   +++ +EI +Y+   +  I E++   F+  F      
Sbjct: 24  AYSKKVNEGTLKEDDYQRKMIVDFERLRKEIESYQPTNKSNISEKSSSRFWKMFQNSKVD 83

Query: 555 XXXXXX--GVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNSFMLNIHARIHELKIKSG 728
                   G+Y++GSVG GKTMLMDLF++  PI +K RVHFN FM N+H R+HELK++S 
Sbjct: 84  TPKIISPRGIYLYGSVGCGKTMLMDLFFENCPIDKKRRVHFNDFMQNVHKRMHELKMQSN 143

Query: 729 KGASSF 746
           K    F
Sbjct: 144 KARGKF 149



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 767 FDPIPPVAADITQESWLICXDEF 835
           FDP+P +  +I + + L+C DEF
Sbjct: 149 FDPVPVIVDEIMETTNLLCFDEF 171


>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 464 YFLQMLHYTF-LMRIFA*CLPVHFLSVCLPRSVVYEVLCVS 345
           +F +M+ +TF L+ +   C+P+ F++       VY V+C++
Sbjct: 60  HFYEMVKFTFYLLVLLILCIPLLFVATHFSEIAVYLVICLA 100


>Z70271-5|CAA94233.2|  443|Caenorhabditis elegans Hypothetical
           protein W08D2.4 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 336 SSQTHAQHFVNDGPWQAYTQ-KVNRKALSKDPHQERVVQ-HLQKVYQEISNYERPIIQEQ 509
           S  TH  H  ++G  QAY Q  + +K    D   E+ ++  L KV   +S Y+  + QE+
Sbjct: 41  SDATHIFHAFHEGSSQAYKQLDLLKKHGEHDEFLEKQLEKRLDKVDINVSAYDVSVAQEK 100

Query: 510 NIGSFF 527
            +   F
Sbjct: 101 KMVESF 106


>AF125971-4|AAD14766.1|  381|Caenorhabditis elegans Hypothetical
           protein Y4C6B.3 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 548 VWLLEEIKKRSYVLFLYYGPLIITNLLIYFLQMLHYTFLMRIFA*CLPVHFLSVCL 381
           VWL    +  + +L   Y P+   N+L + ++M+ + +L  I A  LP  F+   L
Sbjct: 205 VWLCAFTELSTLILIATYAPIYFRNVLKFDIKMIGF-YLGLILAIHLPFRFVCALL 259


>AF031477-1|AAC15586.1|  443|Caenorhabditis elegans
           delta6-fatty-acid-desaturase protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 336 SSQTHAQHFVNDGPWQAYTQ-KVNRKALSKDPHQERVVQ-HLQKVYQEISNYERPIIQEQ 509
           S  TH  H  ++G  QAY Q  + +K    D   E+ ++  L KV   +S Y+  + QE+
Sbjct: 41  SDATHIFHAFHEGSSQAYKQLDLLKKHGEHDEFLEKQLEKRLDKVDINVSAYDVSVAQEK 100

Query: 510 NIGSFF 527
            +   F
Sbjct: 101 KMVESF 106


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 252 FCLLSSIFFLFETQSSFHYIIYCFFIT 172
           F  L+SI  LF   SSF +I  CFF++
Sbjct: 316 FMHLNSITLLFLMASSFSHIFVCFFMS 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,257
Number of Sequences: 27780
Number of extensions: 383330
Number of successful extensions: 1069
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)