Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C19
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   226   2e-60
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   226   2e-60
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.0  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  226 bits (553), Expect = 2e-60
 Identities = 107/209 (51%), Positives = 139/209 (66%)
 Frame = +2

Query: 143 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 322
           RREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S E
Sbjct: 23  RREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSE 82

Query: 323 LPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAF 502
           LPRYG+K GL N+ AAY+TG                              E +++GP  F
Sbjct: 83  LPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPF 142

Query: 503 RCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGL 682
           + +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G 
Sbjct: 143 KVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGG 202

Query: 683 HVAEYMXSLEQDDEDSFKRQFXKYIKLGV 769
           HVAEYM  L  DDE+ +++QF   I  G+
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGI 231


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  226 bits (553), Expect = 2e-60
 Identities = 107/209 (51%), Positives = 139/209 (66%)
 Frame = +2

Query: 143 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 322
           RREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S E
Sbjct: 23  RREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSE 82

Query: 323 LPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAF 502
           LPRYG+K GL N+ AAY+TG                              E +++GP  F
Sbjct: 83  LPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPF 142

Query: 503 RCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGL 682
           + +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G 
Sbjct: 143 KVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGG 202

Query: 683 HVAEYMXSLEQDDEDSFKRQFXKYIKLGV 769
           HVAEYM  L  DDE+ +++QF   I  G+
Sbjct: 203 HVAEYMEMLIDDDEERYQKQFSGLIADGI 231


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 407 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 315
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,776
Number of Sequences: 5004
Number of extensions: 60025
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)