Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C17
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    26   6.7  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    26   8.9  
AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    26   8.9  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 176 NVYFYIDVVIICNIFFCYFVENNIINYSMLLE 271
           N+  Y D+++I  I F +  E  I  YS LLE
Sbjct: 69  NLGLYFDLILIAIIKFYFHRERPIKTYSKLLE 100


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 YIDVVIICNIFFCYFVENNIINYSMLLE 271
           +I ++   N+F C F+ N+I NY+   E
Sbjct: 226 HIALLDAANVFLCDFLPNSISNYAAQFE 253


>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 170 KKNVYFYIDVVIICNI--FFCYFVENNIINYSMLL 268
           +K +Y     + I  +   FC FV  N INY +++
Sbjct: 505 EKQIYSQTFAIAILKLVLLFCLFVAGNFINYEIII 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,498,130
Number of Sequences: 27780
Number of extensions: 86150
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)