Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C17
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.35 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.35 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.35 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   0.47 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   7.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.6  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 245 YCFQQNN-KKIYCRLSQRRYKNIHF 174
           Y +  NN KK+YC   ++ Y NI++
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINY 113


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 245 YCFQQNN-KKIYCRLSQRRYKNIHF 174
           Y +  NN KK+YC   ++ Y NI++
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINY 113


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 245 YCFQQNN-KKIYCRLSQRRYKNIHF 174
           Y +  NN KK+YC   ++ Y NI++
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYYNINY 113


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 0.47
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -2

Query: 262 HGIVYYIVFNKITKKYIADYHNVDIKIYIFFLNINAASLLLFLR 131
           + I  YIV    + KY+ +Y++ + K+  F  ++   +   ++R
Sbjct: 195 NNIETYIVNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYMR 238


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 256 IVYYIVFNKITKKYIADYHNV 194
           IV+YI+   + +  + DY N+
Sbjct: 344 IVFYIISRYVFRSALEDYCNI 364


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 247 YIVFNKITKKYIADYHNVDIKIYIFFLNINAASLLLFLRIPF 122
           YI+    +  Y+   +N++ K+  F  +I   +   FLR  F
Sbjct: 199 YIIPANYSGWYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAF 240


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 190 IKIYIFFLNINAASLLLFLRIPFL 119
           +++YIFFL   A ++ + +  P +
Sbjct: 481 LQLYIFFLVTTAGTIGILMDAPHI 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,553
Number of Sequences: 438
Number of extensions: 1525
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)