Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C16
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0435 - 21198234-21198379,21199012-21199030,21199093-211993...    32   0.52 
01_01_0870 - 6789903-6792251                                           30   2.1  
10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576...    29   4.9  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    29   4.9  
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    29   6.5  
04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708...    28   8.5  

>05_04_0435 -
           21198234-21198379,21199012-21199030,21199093-21199302,
           21199393-21199522,21199625-21199795,21199931-21200053,
           21200185-21200289,21200412-21201124
          Length = 538

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 654 VLGAGCDDAVIDLLGGAARA-RYGQTVIGPVGRTVYTAALQVCLYDINGLLDVLVYRILS 478
           VL  GC+ AV +LL    +A R  +  +  +GR  +   +++  Y   G   +LVY  + 
Sbjct: 222 VLADGCEVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYVD 281

Query: 477 NGSVQ 463
           NG+++
Sbjct: 282 NGNLE 286


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = -1

Query: 660 GRVLGAGCDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVCLYDINGLLDVLVYRIL 481
           G + G+    AV +L G     +  +T +  VG   +T  +++  + +NG   +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 480 SNGSVQVAH 454
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


>10_08_0512 +
           18455454-18456121,18456214-18456318,18457493-18457615,
           18457732-18457902,18458076-18458205,18458458-18458670,
           18458757-18458866,18459144-18459186
          Length = 520

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -1

Query: 726 EHHTNVLHVNNQFSKTSLRVEV-GRVLGAGCDDAVIDLLGGAARARYGQTV-IGPVGRTV 553
           EH TN     N   +    V   GR++  G D A+  LL    +A     V +  +G   
Sbjct: 183 EHATNRFSKENVIGEGGYGVVYRGRLIN-GTDVAIKKLLNNMGQAEKEFRVEVEAIGHVR 241

Query: 552 YTAALQVCLYDINGLLDVLVYRILSNGSVQ 463
           +   +++  Y + G+  +LVY  ++NG+++
Sbjct: 242 HKNLVRLLGYCVEGIHRMLVYEYVNNGNLE 271


>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 737  ESVSLWFXSSV*YSHAASLVPFAXNMKQFKLQQNTKQNLYDKT 865
            ES  L+F S++ Y H AS +    ++  FK Q +  QNLY  T
Sbjct: 1310 ESTRLYFESALKYLHVASTLEPPPSIDGFK-QCDAAQNLYSDT 1351


>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +3

Query: 627  RRRRSLHRELDQLPLEGM---SY*TGCSHEGHWYGARRRWSRYRFGSXP 764
            RRRRS  R + QL L  +   S  + CS    W G    W+R  +   P
Sbjct: 1246 RRRRSWSRSMGQLNLIQLCVHSRASRCSKIARWMGVEDWWNRLAYSGLP 1294


>04_03_0217 -
           12769956-12770252,12770340-12770490,12770572-12770803,
           12770979-12771040,12771189-12771235,12771313-12771431,
           12771513-12771671,12771745-12771925,12772010-12772361,
           12772673-12772717,12772789-12772854,12772951-12773016,
           12773107-12773178,12773283-12773357,12773437-12773508,
           12774169-12774240,12774499-12774570,12776252-12776323,
           12776400-12776471,12776811-12776997,12778343-12778457
          Length = 861

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 588 GQTVIGPVGRTVYTAALQVCLYDINGLLDVLVYRILSNGSVQVA 457
           G+   GPV +  +  A  + + ++ G   +LVY  L NGS+  A
Sbjct: 590 GEGGFGPVYKQYFVHAQNIHVTNLAGKTPLLVYEYLENGSLDQA 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,568,199
Number of Sequences: 37544
Number of extensions: 450171
Number of successful extensions: 1199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)