Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C15
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 196 3e-50
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 194 6e-50
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 183 1e-46
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 142 3e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 57 2e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.008
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 6.5
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 8.6
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 8.6
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 196 bits (477), Expect = 3e-50
Identities = 94/155 (60%), Positives = 109/155 (70%), Gaps = 2/155 (1%)
Frame = +2
Query: 134 ITMPAKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGC 307
+TM KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC
Sbjct: 117 LTM-VKAVVVLGSSEIVKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGC 174
Query: 308 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRT 487
S G H+NP ++HG P RH GDLGN+ A ED GV + + DSQI L GPNSIIGR
Sbjct: 175 MSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRA 233
Query: 488 LVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 592
+VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 234 VVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 194 bits (474), Expect = 6e-50
Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Frame = +2
Query: 149 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 322
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 323 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 502
HFNP ++HG P RH GDLGNI A D GV V++ DSQI L G +SIIGR +VVHA
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHA 120
Query: 503 DPDDLGLGGHELSKTTGNAGGRIACGVIGL 592
DPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 183 bits (446), Expect = 1e-46
Identities = 89/153 (58%), Positives = 102/153 (66%), Gaps = 2/153 (1%)
Frame = +2
Query: 149 KAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 322
KAV VL+G V G V Q D++ P V+ V GLT G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 323 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 502
HFNP HG P VRH GDLGNI A GV + +I D QI L GPNS++GR VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 503 DPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 601
DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 171 LEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 142 bits (344), Expect = 3e-34
Identities = 67/117 (57%), Positives = 77/117 (65%)
Frame = +2
Query: 176 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 355
V+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 356 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 526
PS RHVGDLGNI A +D GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 83 PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 57.2 bits (132), Expect = 2e-08
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Frame = +2
Query: 131 NITMPAKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCT 310
N + + AV +G V V Q +V GL+ GKHG+ ++EFGD T G
Sbjct: 160 NDFLVSAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAE 219
Query: 311 SAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTL 490
S G +NP P +GDLG +EA E G + S ++ + +IGR++
Sbjct: 220 STGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSI 269
Query: 491 VVHA--DPDDLGLGGHELSKTTG 553
++A D D G+ ++++ G
Sbjct: 270 ALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 215 SPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 319
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 461 GPNSIIGRTLVVHADPDDLGLGG 529
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 8.6
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +2
Query: 317 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 475
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 476 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 586
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 290 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 469
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,848,295
Number of Sequences: 37544
Number of extensions: 442716
Number of successful extensions: 1086
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -