Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C15
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 190 1e-48
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 190 1e-48
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 190 1e-48
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 190 1e-48
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 175 5e-44
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 163 2e-40
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 161 6e-40
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 161 6e-40
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 32 0.63
U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical pr... 30 1.9
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 3.4
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 29 3.4
U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical pr... 29 5.9
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 140 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 316
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 317 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 496
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 497 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 595
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 140 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 316
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 317 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 496
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 497 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 595
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 140 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 316
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 317 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 496
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 497 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 595
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 140 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 316
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 317 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 496
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 83 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 141
Query: 497 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 595
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 142 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 177
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 175 bits (425), Expect = 5e-44
Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 4/153 (2%)
Frame = +2
Query: 149 KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 325
+AV VLRG V GTV+ Q+ E GE++GL+ G HGFH+H++GD+T+GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 326 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 505
FNP K +HGG S VRHVGDLGN+EA D GV K+ D +SL G N++IGR++VVH D
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 506 PDDLGLG---GHELSKTTGNAGGRIACGVIGLA 595
DDLG G E S TGNAG R ACGVI LA
Sbjct: 143 RDDLGQGIDDKAEESLKTGNAGARAACGVIALA 175
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 163 bits (395), Expect = 2e-40
Identities = 79/146 (54%), Positives = 99/146 (67%)
Frame = +2
Query: 173 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 352
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 353 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGH 532
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 533 ELSKTTGNAGGRIACGVIGLAKI*IL 610
+ SKTTGNAG R+ACG IG+ + IL
Sbjct: 156 DQSKTTGNAGSRLACGTIGIVEERIL 181
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 161 bits (391), Expect = 6e-40
Identities = 77/139 (55%), Positives = 95/139 (68%)
Frame = +2
Query: 173 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 352
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 353 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGH 532
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 533 ELSKTTGNAGGRIACGVIG 589
+ SKTTGNAG R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 161 bits (391), Expect = 6e-40
Identities = 77/139 (55%), Positives = 95/139 (68%)
Frame = +2
Query: 173 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 352
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 353 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGH 532
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 533 ELSKTTGNAGGRIACGVIG 589
+ SKTTGNAG R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 146 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 325
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 884 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 943
Query: 326 FN 331
F+
Sbjct: 944 FS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 146 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 325
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 675 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 734
Query: 326 FN 331
F+
Sbjct: 735 FS 736
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.9 bits (69), Expect = 0.63
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 578 HKQYGHQHYQWSYLAHGHRVPSHQGQHGQ 492
H +G H HGH P+H G HG+
Sbjct: 580 HGSHGVHHGHHESHGHGHHAPAHHGHHGE 608
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 578 HKQYGHQHYQWSYLAHGHRVPSHQGQHGQ 492
H H H++ S+ HGH P+H G HG+
Sbjct: 434 HAPAHHGHHE-SH-GHGHHSPAHHGHHGE 460
>U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical
protein C25B8.4c protein.
Length = 145
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 531 MS*VRPLVMLVAVLLVESLAWLRFKYFHFSYVGLGTTIFSD 653
MS + LV+LVA + S + + K F++SY GT F+D
Sbjct: 1 MSRIFKLVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 41
>U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical
protein C25B8.4a protein.
Length = 212
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 531 MS*VRPLVMLVAVLLVESLAWLRFKYFHFSYVGLGTTIFSD 653
MS + LV+LVA + S + + K F++SY GT F+D
Sbjct: 1 MSRIFKLVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 41
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Frame = +3
Query: 129 TISQCPPKQFAYFVVMLAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQMVA 308
T+ +C + F+ + S S M +HL+ + + + T ++ +L + A
Sbjct: 1354 TLMKCVSEAVKLFISLSHCFMGSRSLMNAHLIAVMNKGNHEALILTSAIIGSLAKIERFA 1413
Query: 309 HQLELISTLKNKI-MVVPVLLYAMSATSVTLRQLKTLESL---KYQSKILRSLFMDLTAS 476
HQL +T + M+ +LL + TL L + ++ Y +R+ + + T+S
Sbjct: 1414 HQLLCSTTTTERFPMLSSLLLKHFNCEKETLASLTSFPNILRFLYDQTFMRNAY-ENTSS 1472
Query: 477 L 479
L
Sbjct: 1473 L 1473
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Frame = +3
Query: 129 TISQCPPKQFAYFVVMLAELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQMVA 308
T+ +C + F+ + S S M +HL+ + + + T ++ +L + A
Sbjct: 1314 TLMKCVSEAVKLFISLSHCFMGSRSLMNAHLIAVMNKGNHEALILTSAIIGSLAKIERFA 1373
Query: 309 HQLELISTLKNKI-MVVPVLLYAMSATSVTLRQLKTLESL---KYQSKILRSLFMDLTAS 476
HQL +T + M+ +LL + TL L + ++ Y +R+ + + T+S
Sbjct: 1374 HQLLCSTTTTERFPMLSSLLLKHFNCEKETLASLTSFPNILRFLYDQTFMRNAY-ENTSS 1432
Query: 477 L 479
L
Sbjct: 1433 L 1433
>U41556-6|AAP68953.1| 248|Caenorhabditis elegans Hypothetical
protein C25B8.4b protein.
Length = 248
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 549 LVMLVAVLLVESLAWLRFKYFHFSYVGLGTTIFSD 653
LV+LVA + S + + K F++SY GT F+D
Sbjct: 43 LVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,022,302
Number of Sequences: 27780
Number of extensions: 389390
Number of successful extensions: 1056
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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