Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C15
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 605 ILSFFICWAWYY 640
           +++FFICWA ++
Sbjct: 266 VITFFICWAPFH 277


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 605 ILSFFICWAWYY 640
           I  FFICW  YY
Sbjct: 266 IAVFFICWTPYY 277



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 556 CWWPYCLWSHWLG*DLNT 609
           CW PY + S W   D N+
Sbjct: 272 CWTPYYVMSLWYWIDRNS 289


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 563 HQHYQWSYLAHGHRVPSHQGQHG 495
           HQH+   Y  H HR  S   QHG
Sbjct: 319 HQHHPSQY--HPHRGSSPHHQHG 339


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 605 ILSFFICWAWYY 640
           +++FFICWA ++
Sbjct: 291 VVAFFICWAPFH 302


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 581 VIGLAKI*ILSFFICWAWYY 640
           VI +    ++ FFICWA ++
Sbjct: 268 VIKMLSAVVILFFICWAPFH 287


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 77  ISFTRKTANTCTLLQSPIKAVS 12
           I F R    TC +  +PIK VS
Sbjct: 319 IDFGRPATFTCNVRGNPIKTVS 340


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 128 YNITMPAKAVCVLRGDVSGTVFFDQQD 208
           YN+ +P K++   + DV+     D  D
Sbjct: 104 YNVAVPTKSILEKKPDVTTVELVDATD 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,968
Number of Sequences: 438
Number of extensions: 5323
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)