Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_C14
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   285   4e-78
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    30   0.36 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   3.3  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   7.6  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   7.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   7.6  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  285 bits (700), Expect = 4e-78
 Identities = 133/247 (53%), Positives = 171/247 (69%), Gaps = 1/247 (0%)
 Frame = +2

Query: 29  NNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVF 208
           N+R +C +  +K  D E WFGIEQEY +LD   R               +YCGVG  +VF
Sbjct: 113 NHRDACAKLLEKHADKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVF 172

Query: 209 ARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAEE 388
           ARD+VEAHY+ CLYAG+ I+G NAEVMPSQWE+QVGP  G+  GD LW++R++LHR+AE+
Sbjct: 173 ARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAED 232

Query: 389 YGVIVTFDPKPV-QDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDPR 565
           +GV ++F PKP+  DWNG+G HTN STK  R + GI  IE  ++K +K H +HI VY   
Sbjct: 233 FGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVY--- 289

Query: 566 GGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPASNCDPYSV 745
            G DN+ RLTG HET SI+ F+ GVA+RG+S+RIPRSVA +  GY EDRRPAS+ DPY V
Sbjct: 290 -GDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLV 348

Query: 746 IDALMRT 766
              +  T
Sbjct: 349 TGIITET 355


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 129 APSGGPRVVS---PHRKGHTTAVSVPTKSLPETLSKPTIDAVFMLAYRLPVQTLK*CLHS 299
           AP+  PR VS   P  +  TTA +V  K  P+T  +P+    F        +T K  L  
Sbjct: 301 APAPIPRPVSTLIPLTQVRTTASNV-IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRR 359

Query: 300 GSSKSVPQLE 329
           GSSK  P L+
Sbjct: 360 GSSKRKPSLQ 369


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +3

Query: 546  LRFMILAVEKIMREG*LVFMKLPVLMTSVQAWLIVVAVSEY 668
            LR   L  +K++R+G L  + L +   +VQA  IVVA S+Y
Sbjct: 957  LRIYDLGNKKMLRKGELSAVPLFITHITVQASRIVVADSQY 997


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 305 TPTVKASLQRLYRQSVRQHKDSIDSGLRQGLWQRLCWHRHRSSMALAVGGN 153
           TPT      RL   +   H  +  SG+    W +LC+   R  ++ ++GG+
Sbjct: 286 TPTTANGTLRLRMDAFYNHDLNFRSGMVT-TWNKLCFKGGRIEVSASLGGS 335


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 344 HHQHALQLRDRLGTPTVKASLQRLYRQSVRQHKDSIDSGL 225
           HH     ++DR GTP +  +L  L    +R+    I + L
Sbjct: 295 HHPAYRTIKDRCGTPYLAKTLSNLLVSHIRERLPDIKARL 334


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = -2

Query: 811 VSYTSFYSVLFIKNTSTHERIDHRVRVTV*SRSTIFQITLXIFSDR------ARYSDTAT 650
           ++YT  Y  L  K   T   I   V  T+       +IT+   S R      ARY +T  
Sbjct: 578 LTYTPLYVSLLEKTPFTDPSIPSLVERTIVPAELQNEITVSSASLRFLGKVVARYRETLN 637

Query: 649 TISHACTEV 623
            + H C+E+
Sbjct: 638 LLDHGCSEL 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,651
Number of Sequences: 5004
Number of extensions: 77198
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)