Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_C14
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 349 2e-96
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 349 2e-96
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 304 5e-83
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 303 7e-83
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 301 4e-82
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 255 3e-68
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 29 4.1
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 29 4.1
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 28 7.2
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 28 7.2
AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase prot... 28 7.2
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 28 9.5
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 349 bits (857), Expect = 2e-96
Identities = 162/251 (64%), Positives = 186/251 (74%), Gaps = 1/251 (0%)
Frame = +2
Query: 26 SNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKV 205
+N R C+E +K D PWFG+EQEY LLD D YYCGVGANKV
Sbjct: 113 TNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKV 172
Query: 206 FARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAE 385
+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVGP G+ GD LWVARY+L R+AE
Sbjct: 173 YGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMGDQLWVARYLLQRVAE 232
Query: 386 EYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDP 562
E+GVI +FD KP++ DWNG+G HTNFST KMRN GI EI AI+KLS VH +HI YDP
Sbjct: 233 EFGVIASFDCKPIKGDWNGAGCHTNFSTDKMRNPGGIDEIMSAINKLSLVHPQHIAYYDP 292
Query: 563 RGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPASNCDPYS 742
GGKDNERRLTGLHETASI+ FS GVA+R SSIRIPRS +D GY EDRRP+SNCDPY+
Sbjct: 293 HGGKDNERRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSSNCDPYT 352
Query: 743 VIDALMRTCIL 775
V AL+RT L
Sbjct: 353 VTGALVRTVCL 363
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 349 bits (857), Expect = 2e-96
Identities = 162/251 (64%), Positives = 186/251 (74%), Gaps = 1/251 (0%)
Frame = +2
Query: 26 SNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKV 205
+N R C+E +K D PWFG+EQEY LLD D YYCGVGANKV
Sbjct: 116 TNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKV 175
Query: 206 FARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAE 385
+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVGP G+ GD LWVARY+L R+AE
Sbjct: 176 YGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMGDQLWVARYLLQRVAE 235
Query: 386 EYGVIVTFDPKPVQ-DWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMKHIKVYDP 562
E+GVI +FD KP++ DWNG+G HTNFST KMRN GI EI AI+KLS VH +HI YDP
Sbjct: 236 EFGVIASFDCKPIKGDWNGAGCHTNFSTDKMRNPGGIDEIMSAINKLSLVHPQHIAYYDP 295
Query: 563 RGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPASNCDPYS 742
GGKDNERRLTGLHETASI+ FS GVA+R SSIRIPRS +D GY EDRRP+SNCDPY+
Sbjct: 296 HGGKDNERRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSSNCDPYT 355
Query: 743 VIDALMRTCIL 775
V AL+RT L
Sbjct: 356 VTGALVRTVCL 366
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 304 bits (746), Expect = 5e-83
Identities = 133/259 (51%), Positives = 178/259 (68%), Gaps = 3/259 (1%)
Frame = +2
Query: 11 MSQQKSNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGV 190
M +N+R C E K D +PWFG+EQEY+++D D YYCG+
Sbjct: 110 MKPTATNHRQMCAELMKKVSDQQPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGI 169
Query: 191 GANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYIL 370
GA++ F R++VE HYR CL+AG+ I G+NAEV P QWEFQ+G +G+ GD LW+ARYIL
Sbjct: 170 GADRAFGREVVETHYRACLHAGITIFGSNAEVTPGQWEFQIGTCLGIEMGDQLWMARYIL 229
Query: 371 HRLAEEYGVIVTFDPKP---VQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMK 541
HR+AE++GV V+ DPKP + DWNG+G HTNFST MR +G+ I A++ L K H +
Sbjct: 230 HRVAEQFGVCVSLDPKPRVTMGDWNGAGCHTNFSTIDMRRPDGLETIIAAMEGLKKTHSE 289
Query: 542 HIKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPA 721
+KVYDP GG DN RRLTG HET+ + FS G+ANR S+RIPR VA++ +GYLEDRRP+
Sbjct: 290 AMKVYDPNGGHDNLRRLTGRHETSQADQFSWGIANRACSVRIPRQVADEGRGYLEDRRPS 349
Query: 722 SNCDPYSVIDALMRTCILN 778
SNCDPY V ++++ ++N
Sbjct: 350 SNCDPYLVTAMIVKSVLIN 368
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 303 bits (745), Expect = 7e-83
Identities = 135/260 (51%), Positives = 179/260 (68%), Gaps = 3/260 (1%)
Frame = +2
Query: 11 MSQQKSNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGV 190
M +N+R +C K + PWFG+EQEY+++D D YYCGV
Sbjct: 110 MKPTATNHRQNCAAIMKKVAEHHPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGV 169
Query: 191 GANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYIL 370
GA++ F R++VE HYR CL+AG+ I GTNAEV P QWEFQ+G G+ GD LW+ARYIL
Sbjct: 170 GADRAFGREVVETHYRACLHAGINIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMARYIL 229
Query: 371 HRLAEEYGVIVTFDPKP---VQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMK 541
HR+AE++GV V+ DPKP + DWNG+G HTNFST +MR NG+ I +A+ L + H +
Sbjct: 230 HRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTIEMRRPNGLNAIFEAMKGLERTHSE 289
Query: 542 HIKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPA 721
+ VYDP GG+DN RRLTG HET+ + FS G+ANR SIRIPR VA++ KGYLEDRRP+
Sbjct: 290 AMSVYDPNGGRDNLRRLTGRHETSQADKFSWGIANRACSIRIPRQVADETKGYLEDRRPS 349
Query: 722 SNCDPYSVIDALMRTCILNE 781
SNCDPY V ++++C+L++
Sbjct: 350 SNCDPYLVTAMIVKSCLLSD 369
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 301 bits (739), Expect = 4e-82
Identities = 136/248 (54%), Positives = 173/248 (69%), Gaps = 3/248 (1%)
Frame = +2
Query: 11 MSQQKSNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGV 190
M +++R +C E + +D PWFG+EQEY+++D D YYC V
Sbjct: 110 MQPTATSHRQACAEIMHEIRDTRPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSV 169
Query: 191 GANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYIL 370
GA++ F R++VE HYR CL+AG+ I GTNAEV P QWEFQ+G G+ GD LW++RYIL
Sbjct: 170 GADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYIL 229
Query: 371 HRLAEEYGVIVTFDPKP---VQDWNGSGAHTNFSTKKMRNDNGIIEIEKAIDKLSKVHMK 541
HR+AE++GV V+ DPKP + DWNG+G HTNFST +MR GI IE A+ L + H++
Sbjct: 230 HRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLE 289
Query: 542 HIKVYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIPRSVAEDXKGYLEDRRPA 721
+KVYDP GG+DN RRLTG HET+S + FS GVANRG SIRIPR VA + KGYLEDRRP+
Sbjct: 290 AMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPS 349
Query: 722 SNCDPYSV 745
SNCDPY V
Sbjct: 350 SNCDPYQV 357
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 255 bits (624), Expect = 3e-68
Identities = 115/220 (52%), Positives = 154/220 (70%), Gaps = 5/220 (2%)
Frame = +2
Query: 26 SNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKV 205
+N R C + +K KD EPWFG+EQE+ LL +D YYCGVG+++V
Sbjct: 116 TNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNWPVNGFPAPQGPYYCGVGSDRV 175
Query: 206 FARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAE 385
F R ++EAHYR C+YAG+ I+G+N E MPSQ+E+QVGP G+ GD LWV+RYILHR+ E
Sbjct: 176 FGRHILEAHYRACMYAGIKISGSNVESMPSQFEYQVGPCEGIEMGDQLWVSRYILHRICE 235
Query: 386 EYGVIVTFDPKPV-QDWNGSGAHTNFSTKKMR----NDNGIIEIEKAIDKLSKVHMKHIK 550
+YGV+ + DPKPV +W+G+G H NFST MR + G IE+A+ KLSKVHM HI
Sbjct: 236 DYGVVCSLDPKPVLGEWSGAGCHLNFSTNVMRTPCEDGTGWKAIEEAVVKLSKVHMHHIA 295
Query: 551 VYDPRGGKDNERRLTGLHETASINDFSAGVANRGSSIRIP 670
YDP GG+DNERRL G ++T +++ FS+GVA+R +S+RIP
Sbjct: 296 YYDPHGGRDNERRLIGANQTETVDAFSSGVADREASVRIP 335
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 129 APSGGPRVVSPHRKGHTTAVSVPTKSLPETLSKPT 233
A S PR H KG + S P + +PETLS+ T
Sbjct: 91 ASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMT 125
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 129 APSGGPRVVSPHRKGHTTAVSVPTKSLPETLSKPT 233
A S PR H KG + S P + +PETLS+ T
Sbjct: 91 ASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMT 125
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 121 RSAPLRVAPGWFPPTARAILLRCRCQQSLCQRPC--RSP 231
+ APLR +P PP RA+ + + Q Q PC RSP
Sbjct: 261 KPAPLRFSPARSPPVRRALPIELKPTQHFAQ-PCKIRSP 298
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 688 IFSDRARYSDTATTISHACTEVINTGSFMKTSQPSLIIFSTARIINLN 545
+F + A+ +D+ATT A +T S T+ SL ST I NLN
Sbjct: 785 LFGNIAKPADSATTSFLAPGAASSTSSLAPTAGSSLFGGSTGSIFNLN 832
>AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase protein
1, isoform a protein.
Length = 501
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/89 (23%), Positives = 34/89 (38%)
Frame = +2
Query: 257 VPIAGTNAEVMPSQWEFQVGPSIGVHAGDDLWVARYILHRLAEEYGVIVTFDPKPVQDWN 436
V ++ ++ + P+ VG + L R LH AEE+ I+ QD
Sbjct: 172 VNMSQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTALHNKAEEFKDIIKIGRTHTQDAV 231
Query: 437 GSGAHTNFSTKKMRNDNGIIEIEKAIDKL 523
FS + DN I +E + +L
Sbjct: 232 PLTLGQEFSAYVTQLDNSIARVESTLPRL 260
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 196 QQSLCQRPCRSPLSMLSLCWRTDCRYKR*SDAFTVGVPSRS 318
++ L RPCR LS++ C D K AF VG+P++S
Sbjct: 391 EKCLGSRPCRDILSLMYSCGMYDYSGK---FAFQVGLPAKS 428
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,484
Number of Sequences: 27780
Number of extensions: 441739
Number of successful extensions: 1257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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